[Home] | [Total List]

[189437_at] protein kinase

Description Y73B6A.2 /REP_DB=WormBase Gene ID /WP=CE24636 /TR=Q9N4E5 /GB=AAF36041.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 80      4grp_total > 16      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 7.4
(-2.8)
A 		5.8
(-3)
A 		36.7
(0.1)
A 		65.3
(3)
A 		60
B 2.7
(-3)
A 		20.8
(-0.2)
A 		36.5
(2.3)
A 		41.3
(3)
P 		39
C 14.5
(-2.9)
A 		13.6
(-3)
A 		18.8
(-2.4)
A 		65.8
(3)
A 		52
avr 8.2
(-3) 		13.4
(-2.4) 		30.7
(-0.3) 		57.5
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 13.2
(-0.7)
A 		2.6
(-3)
A 		4.1
(-2.7)
A 		29.9
(3)
A 		27.8
(2.5)
M 		8.6
(-1.7)
A 		27
B 3.7
(-3)
A 		21.6
(0)
A 		17.2
(-0.7)
A 		39.5
(3)
A 		37.6
(2.7)
A 		21.6
(0)
A 		36
C 14.6
(-1.1)
A 		22.7
(0.3)
A 		14
(-1.2)
A 		34
(2.3)
A 		3.5
(-3)
A 		38.2
(3)
P 		35
avr 10.5
(-3) 		15.6
(-1.7) 		11.8
(-2.7) 		34.5
(3) 		23
(0.1) 		22.8
(0.1) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.7
(-2)
A 		1.3
(-3)
A 		9.6
(3)
A 		9.6
(3)
A 		8
B 0.9
(-3)
A 		5.1
(0.2)
A 		8.5
(2.8)
A 		8.8
(3)
P 		8
C 4.8
(-2.3)
A 		3.9
(-3)
A 		6.6
(-0.8)
A 		11.1
(3)
A 		7
avr 2.8
(-3) 		3.4
(-2.5) 		8.2
(1.6) 		9.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.4
(-1.8)
A 		0.9
(-3)
A 		0.9
(-3)
A 		7.6
(2.4)
A 		8.4
(3)
M 		2.1
(-2)
A 		8
B 1.3
(-3)
A 		7.2
(-0.5)
A 		4.2
(-1.8)
A 		10.5
(0.9)
A 		15.3
(3)
A 		8.1
(-0.1)
A 		14
C 5.4
(-0.8)
A 		6.9
(-0)
A 		3.6
(-1.7)
A 		6.8
(-0.1)
A 		1.1
(-3)
A 		12.8
(3)
P 		12
avr 3
(-2.9) 		5
(-0.7) 		2.9
(-3) 		8.3
(3) 		8.3
(3) 		7.7
(2.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189437_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8893
Sequence Type Exemplar sequence
Representative Public ID Y73B6A.2 NCBI
Target Description Y73B6A.2 /REP_DB=WormBase Gene ID /WP=CE24636 /TR=Q9N4E5 /GB=AAF36041.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068630(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068630 NCBI Caenorhabditis elegans Y73B6A.2 (Y73B6A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000010738 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6732964:6736094:-1 9/11 None
Y73B6A.2 ENSEMBL cdna:known chromosome:CEL140:IV:6732964:6735410:-1 gene:Y73B6A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010731 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6732969-6735416(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl Y73B6A.2
Entrez Gene 190644 Entrez gene
SwissProt Q9N4E5 EMBL-EBI
WormBase CE24636 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36041 Hypothetical protein Y73B6A.2 [Caenorhabditis elegans] ref|NP_501031.1| Y73B6A.2 [Caenorhabditis elegans] 0.0
blast AAF36041 Hypothetical protein Y73B6A.2 [Caenorhabditis elegans] ref|NP_501031.1| Y73B6A.2 [Caenorhabditis elegans] 1.0E-159
blast CAA92725 Hypothetical protein C05C12.1 [Caenorhabditis elegans] ref|NP_502112.1| C05C12.1 [Caenorhabditis elegans] 4.0E-79
blast CAE67306 Hypothetical protein CBG12760 [Caenorhabditis briggsae] 5.0E-66
blast CAA92725 Hypothetical protein C05C12.1 [Caenorhabditis elegans] ref|NP_502112.1| C05C12.1 [Caenorhabditis elegans] 7.0E-34
blast NP_501151 D2024.1 [Caenorhabditis elegans] gb|AAA82292.1| Hypothetical protein D2024.1 [Caenorhabditis elegans] 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.8E-5
Pfam IPR000719 EMBL-EBI Protein kinase 1.8E-5
Sequence
Target Sequence 
>C. ELEGANS:189437_AT
ttatgtgcttggaaacccgaccgactgtttgaaaagccgcatattttatttgatcgattt
tgcgatcgcccaaaaatttataggccgagtggatgatttgtactctctgttatatatgac
tgcagagctcaagaaaccacttccttggacatatcttgaagggaacgaattgattcttaa
gaaaaaaaacgcaaagttaacagagttatttgacaatgacgaatttctcaaagttcaaac
aatgatcgaaagcttctcgtacagagactttcctaattatgggttgctttttgaaacttt
cctagaagttttcttaaaaagcgggtctacttggatgtcgccctatgattgggaggggga
aaacatgccatcgttccaggaatgggtcaaagaggcgaacaagcctcgtcatctttttca
atgggaagtcccagaagtcgtgaactatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGTGCTTGGAAACCCGACCGAC 682 673 465 Antisense
CCGACCGACTGTTTGAAAAGCCGCA 67 263 481 Antisense
GTGGATGATTTGTACTCTCTGTTAT 149 491 553 Antisense
GACTGCAGAGCTCAAGAAACCACTT 600 375 582 Antisense
GAAACCACTTCCTTGGACATATCTT 613 357 597 Antisense
AAAGCTTCTCGTACAGAGACTTTCC 168 125 713 Antisense
GAGACTTTCCTAATTATGGGTTGCT 589 391 728 Antisense
AAGCGGGTCTACTTGGATGTCGCCC 307 149 783 Antisense
GAAAACATGCCATCGTTCCAGGAAT 448 355 823 Antisense
AGGCGAACAAGCCTCGTCATCTTTT 461 53 857 Antisense
GAAGTCCCAGAAGTCGTGAACTATC 478 335 889 Antisense
Sequence Source Affymetrix Proprietary Database