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[189436_at] ATP synthase

Description C53B7.4 /REP_DB=WormBase Gene ID /WP=CE06974 /TR=SW:Q18803 /GB=AAC48276.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=ATP synthase
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 41      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 17      6grp_total > 41      4grp_total > 60      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7204
1 2 3 4 range
A 10537.9
(1.9)
P 		10768.6
(2.1)
P 		11715
(3)
P 		5056.7
(-3)
P 		6658
B 11542.6
(3)
P 		9794
(1.4)
P 		11393.4
(2.9)
P 		5177.4
(-3)
P 		6365
C 9567.5
(2.4)
P 		10114.9
(3)
P 		10120.2
(3)
P 		4511.4
(-3)
P 		5609
avr 10549.3
(2.5) 		10225.8
(2.2) 		11076.2
(3) 		4915.2
(-3) 		6161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6981
1 2 3 4 5 6 range
A 10785.5
(1.3)
P 		9945.1
(0.5)
P 		12580.2
(3)
P 		10747.7
(1.2)
P 		8407.1
(-1)
P 		6350.1
(-3)
P 		6230
B 10395.2
(0.1)
P 		11030.8
(0.8)
P 		13331.4
(3)
P 		10089.5
(-0.2)
P 		8755.8
(-1.4)
P 		7158.9
(-3)
P 		6173
C 9148
(-0.5)
P 		10682.7
(1.6)
P 		11725.7
(3)
P 		10504.9
(1.3)
P 		8279.8
(-1.7)
P 		7338.5
(-3)
P 		4387
avr 10109.6
(0.4) 		10552.9
(0.9) 		12545.8
(3) 		10447.4
(0.8) 		8480.9
(-1.4) 		6949.2
(-3) 		5597
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3097
1 2 3 4 range
A 3836.9
(3)
P 		2337.6
(0.1)
P 		3062.5
(1.5)
P 		740.2
(-3)
P 		3097
B 3680.8
(3)
P 		2418.9
(0.1)
P 		2640.1
(0.6)
P 		1103.3
(-3)
P 		2578
C 3167.1
(2.2)
P 		2908.1
(1.7)
P 		3527.2
(3)
P 		760.7
(-3)
P 		2767
avr 3561.6
(3) 		2554.9
(0.8) 		3076.6
(1.9) 		868.1
(-3) 		2694

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2126
1 2 3 4 5 6 range
A 1988.2
(-1.7)
P 		3537
(3)
P 		2739.7
(0.6)
P 		2725.9
(0.6)
P 		2536.9
(-0)
P 		1546
(-3)
P 		1991
B 3617
(2.7)
P 		3671.7
(3)
P 		3237.3
(0.4)
P 		2672.4
(-3)
P 		3557.4
(2.3)
P 		2669.5
(-3)
P 		1002
C 3390.7
(3)
P 		3259.6
(2.4)
P 		2984.4
(1.1)
P 		2112.5
(-3)
P 		2679.2
(-0.3)
P 		2456.6
(-1.4)
P 		1278
avr 2998.6
(0.7) 		3489.4
(3) 		2987.1
(0.6) 		2503.6
(-1.7) 		2924.5
(0.3) 		2224
(-3) 		1265
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189436_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16063
Sequence Type Exemplar sequence
Representative Public ID C53B7.4 NCBI
Target Description C53B7.4 /REP_DB=WormBase Gene ID /WP=CE06974 /TR=SW:Q18803 /GB=AAC48276.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=ATP synthase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076751(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076751 NCBI Caenorhabditis elegans ATP Synthase G homolog family member (asg-2) (asg-2) mRNA, complete cds. 11/11 None
SNAP00000013977 ENSEMBL cdna:SNAP chromosome:CEL140:X:6841211:6841973:1 11/11 None
GENEFINDER00000013986 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6841211:6841973:1 11/11 None
C53B7.4.1 ENSEMBL cdna:known chromosome:CEL140:X:6841204:6842034:1 gene:C53B7.4 11/11 None
C53B7.4.2 ENSEMBL cdna:known chromosome:CEL140:X:6841210:6842021:1 gene:C53B7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6841210-6841973(+) 100.0 100.0
Public Domain and Genome References
Gene Title ATP synthase
Gene Symbol asg-2
Ensembl C53B7.4
Entrez Gene 180956 Entrez gene
SwissProt Q18803 EMBL-EBI
WormBase CE06974 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48276 Atp synthase g homolog protein 2 [Caenorhabditis elegans] ref|NP_509152.1| ATP Synthase G homolog family member (asg-2) [Caenorhabditis elegans] sp|Q18803|ATPN_CAEEL Probable ATP synthase G chain, mitochondrial 7.0E-71
blast CAE65799 Hypothetical protein CBG10906 [Caenorhabditis briggsae] 3.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR006808 EMBL-EBI Mitochondrial ATP synthase g subunit 2.3E-53
Sequence
Target Sequence 
>C. ELEGANS:189436_AT
ttgagaagatcgccaacctcactggggctttgtaccgccaccaacatgctcaatttccac
gtcgcttcgctattctgaaggccgtaggaaagcacgagcttgctccaccacgtcaagctg
actggccagccatcaaggccgattgggccaaagtccagagcttcatccagaccggaggat
acaagaatttgagcattagagaaggacttgtctacactgccgtcactcttgaggttgtct
tctggttcttcgttggagaaatgattggacgtcgctacatcttcggatatcttgttcctg
ctgattacgtttccaagtccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGAAGATCGCCAACCTCACTGG 41 707 38 Antisense
GTCGCTTCGCTATTCTGAAGGCCGT 471 473 98 Antisense
GTAGGAAAGCACGAGCTTGCTCCAC 193 455 121 Antisense
AAGCTGACTGGCCAGCCATCAAGGC 113 149 152 Antisense
GATTGGGCCAAAGTCCAGAGCTTCA 196 435 178 Antisense
GAGCTTCATCCAGACCGGAGGATAC 295 389 195 Antisense
GAGAAGGACTTGTCTACACTGCCGT 536 391 236 Antisense
TGCCGTCACTCTTGAGGTTGTCTTC 429 585 255 Antisense
CGTCGCTACATCTTCGGATATCTTG 596 245 307 Antisense
GGATATCTTGTTCCTGCTGATTACG 365 509 322 Antisense
CTGCTGATTACGTTTCCAAGTCCAC 380 237 335 Antisense
Sequence Source Affymetrix Proprietary Database