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[189435_at] 7TM chemoreceptor, srg family

Description Y25C1A.12 /REP_DB=WormBase Gene ID /WP=CE21480 /TR=Q9TYL5 /GB=AAD12842.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 03      4grp_total > 43      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 94
(0.7)
A 		115.8
(3)
A 		58.5
(-3)
A 		82.8
(-0.5)
A 		57
B 120.7
(3)
A 		109.5
(1.3)
A 		95.6
(-0.8)
A 		81.1
(-3)
A 		40
C 48.4
(-3)
A 		82.7
(1.8)
A 		91.4
(3)
A 		85.7
(2.2)
A 		43
avr 87.7
(-1.3) 		102.7
(3) 		81.8
(-3) 		83.2
(-2.6) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 116
(2.8)
A 		70.5
(-1.2)
A 		50.7
(-3)
A 		66.5
(-1.6)
A 		118.1
(3)
A 		51.7
(-2.9)
A 		67
B 88.2
(2)
A 		97.1
(3)
A 		58.4
(-1.1)
A 		84.7
(1.7)
A 		80.3
(1.2)
A 		41
(-3)
A 		56
C 64.7
(-0.3)
A 		86.8
(3)
A 		64
(-0.4)
A 		84.9
(2.7)
A 		48.9
(-2.7)
A 		46.7
(-3)
A 		40
avr 89.6
(3) 		84.8
(2.3) 		57.7
(-1.4) 		78.7
(1.5) 		82.4
(2) 		46.5
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 34.2
(3)
A 		25.1
(0.5)
A 		15.3
(-2.1)
A 		12.1
(-3)
A 		22
B 38.5
(3)
A 		27.1
(-0.2)
A 		22.2
(-1.6)
A 		17.3
(-3)
A 		21
C 16
(-2.5)
A 		23.8
(0.2)
A 		31.9
(3)
A 		14.4
(-3)
A 		18
avr 29.6
(3) 		25.3
(1.3) 		23.1
(0.4) 		14.6
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 21.4
(-0.5)
A 		25.1
(0.4)
A 		11.1
(-3)
A 		16.9
(-1.6)
A 		35.6
(3)
A 		12.6
(-2.6)
A 		25
B 30.7
(2.4)
A 		32.3
(2.9)
A 		14.2
(-3)
A 		22.4
(-0.3)
A 		32.6
(3)
A 		15.3
(-2.6)
A 		18
C 24
(1.6)
A 		26.5
(3)
A 		16.3
(-2.6)
A 		17.1
(-2.2)
A 		15.8
(-2.9)
A 		15.6
(-3)
A 		11
avr 25.4
(1.9) 		28
(3) 		13.9
(-3) 		18.8
(-0.9) 		28
(3) 		14.5
(-2.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4571
Sequence Type Exemplar sequence
Representative Public ID Y25C1A.12 NCBI
Target Description Y25C1A.12 /REP_DB=WormBase Gene ID /WP=CE21480 /TR=Q9TYL5 /GB=AAD12842.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062044(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062044 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-24) (srg-24) mRNA, complete cds. 11/11 None
Y25C1A.12 ENSEMBL cdna:known chromosome:CEL140:II:3098398:3100641:-1 gene:Y25C1A.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041883 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041894 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3098396-3100640(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-24
Ensembl Y25C1A.12
Entrez Gene 189541 Entrez gene
SwissProt Q9TYL5 EMBL-EBI
WormBase CE33210 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494445 Serpentine Receptor, class G (gamma) family member (srg-24) [Caenorhabditis elegans] gb|AAD12842.2| Serpentine receptor, class g (gamma) protein 24 [Caenorhabditis elegans] 1.0E-171
blast NP_494443 Serpentine Receptor, class G (gamma) family member (srg-22) [Caenorhabditis elegans] gb|AAD12845.2| Serpentine receptor, class g (gamma) protein 22 [Caenorhabditis elegans] 1.0E-145
blast NP_494442 Serpentine Receptor, class G (gamma) family member (srg-21) [Caenorhabditis elegans] gb|AAD12840.2| Serpentine receptor, class g (gamma) protein 21 [Caenorhabditis elegans] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 8.0E-110
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494445.2 6 32-54,67-89,104-126,159-181,207-229,241-263
Y25C1A.12 6 32-54,67-89,104-126,159-181,207-229,241-263
Sequence
Target Sequence 
>C. ELEGANS:189435_AT
atgacacgctagttgctgcatttttcagccgccttattggtagagtatctcccctttgtc
caattatagctccgtacttcttcaccccatctataatcaccaaaacctattacactatgt
ccacctacaacgcagcattcaaaactatttctcaaattgtgataagttttaatagaatga
catgtgttgtacttccagttagacatgttacggccaacacctctctcctgaacctattcc
actgtatcccatgtgttgtactggttaccatattctttatagtcaccatatatggcctaa
caatactggaatatagaatcaaaaacgttgagagatacctgacaattttcacattgataa
tgggtttacagacgacgttgttcgcatttacacagatttattttgccttccttgctacct
ctatcccaagcatccgcgcaatgatgctttcaatcgcatttcatatattcgatgtacaac
atgtctacagcccaatagcacttttaatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACACGCTAGTTGCTGCATTTTT 381 45 251 Antisense
CATTTTTCAGCCGCCTTATTGGTAG 127 215 269 Antisense
TATTGGTAGAGTATCTCCCCTTTGT 364 663 285 Antisense
ATCTCCCCTTTGTCCAATTATAGCT 524 31 297 Antisense
CAATTATAGCTCCGTACTTCTTCAC 11 181 311 Antisense
AACCTATTACACTATGTCCACCTAC 385 147 354 Antisense
TCCACCTACAACGCAGCATTCAAAA 408 589 370 Antisense
TTAGACATGTTACGGCCAACACCTC 561 681 449 Antisense
CACAGATTTATTTTGCCTTCCTTGC 209 195 641 Antisense
TATCCCAAGCATCCGCGCAATGATG 273 657 672 Antisense
ACAGCCCAATAGCACTTTTAATCTC 84 109 737 Antisense
Sequence Source Affymetrix Proprietary Database