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[189433_at] 7TM chemoreceptor, srd family

Description E04F6.14 /REP_DB=WormBase Gene ID /WP=CE20650 /GEN=srd-56 /GB=AAK68294.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 15      4grp_total > 44      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 6.9
(-3)
A 		25.1
(3)
A 		11.5
(-1.5)
A 		7.7
(-2.7)
A 		18
B 40.4
(3)
A 		32
(1.6)
A 		6.1
(-2.5)
A 		3.1
(-3)
A 		37
C 31.5
(1.9)
A 		37.6
(3)
A 		3.3
(-3)
A 		9.5
(-1.9)
A 		34
avr 26.3
(1.7) 		31.6
(3) 		7
(-3) 		6.8
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 58.4
(3)
A 		2.1
(-3)
A 		23.2
(-0.7)
A 		7.5
(-2.4)
A 		9.8
(-2.2)
A 		1.9
(-3)
A 		57
B 3.6
(-2.6)
A 		30.6
(3)
A 		22.5
(1.3)
A 		4.6
(-2.4)
A 		13.9
(-0.5)
A 		1.6
(-3)
A 		29
C 22.7
(1.9)
A 		27.4
(3)
A 		2.6
(-2.7)
A 		2.6
(-2.7)
A 		3.2
(-2.6)
A 		1.3
(-3)
A 		26
avr 28.2
(3) 		20
(1.2) 		16.1
(0.3) 		4.9
(-2.3) 		9
(-1.3) 		1.6
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.5
(-1)
A 		5.4
(3)
A 		3
(-0.3)
A 		1.1
(-3)
A 		4
B 12.9
(3)
A 		7.9
(0.5)
A 		1.4
(-2.7)
A 		0.7
(-3)
A 		12
C 10.4
(2.8)
A 		10.8
(3)
A 		1.1
(-3)
A 		1.6
(-2.7)
A 		10
avr 8.6
(3) 		8
(2.5) 		1.8
(-2.4) 		1.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 10.8
(3)
A 		0.8
(-2.8)
A 		5.1
(-0.3)
A 		1.9
(-2.2)
A 		2.9
(-1.6)
A 		0.5
(-3)
A 		10
B 1.3
(-2.6)
A 		10.2
(3)
A 		5.5
(0.1)
A 		1.2
(-2.6)
A 		5.7
(0.2)
A 		0.6
(-3)
A 		10
C 8.4
(3)
A 		8.4
(3)
A 		0.7
(-2.8)
A 		0.5
(-2.9)
A 		1
(-2.6)
A 		0.4
(-3)
A 		8
avr 6.8
(3) 		6.5
(2.7) 		3.8
(0.1) 		1.2
(-2.3) 		3.2
(-0.4) 		0.5
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189433_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4614
Sequence Type Exemplar sequence
Representative Public ID E04F6.14 NCBI
Target Description E04F6.14 /REP_DB=WormBase Gene ID /WP=CE20650 /GEN=srd-56 /GB=AAK68294.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063096(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063096 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-56) (srd-56) mRNA, complete cds. 11/11 None
E04F6.14 ENSEMBL cdna:known chromosome:CEL140:II:7201947:7203141:-1 gene:E04F6.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7201942-7203137(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-56
Ensembl E04F6.14
Entrez Gene 191818 Entrez gene
SwissProt Q95QP1 EMBL-EBI
WormBase CE20650 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68294 Serpentine receptor, class d (delta) protein 56 [Caenorhabditis elegans] ref|NP_495497.1| Serpentine Receptor, class D (delta) family member (srd-56) [Caenorhabditis elegans] 1.0E-172
blast CAE67565 Hypothetical protein CBG13092 [Caenorhabditis briggsae] 1.0E-98
blast AAA68361 Serpentine receptor, class d (delta) protein 59 [Caenorhabditis elegans] ref|NP_495499.1| Serpentine Receptor, class D (delta) family member (srd-59) [Caenorhabditis elegans] sp|Q19061|SRD59_CAEEL Serpentine receptor class delta-59 (Protein srd-59) 9.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495497.1 7 13-35,48-70,92-110,122-144,179-201,222-244,274-296
E04F6.14 7 13-35,48-70,92-110,122-144,179-201,222-244,274-296
Sequence
Target Sequence 
>C. ELEGANS:189433_AT
atgataattccattcactgctccacgggatttcactactgttcaaaacttgactgcaata
gaacattcgacgtacaatttgtctttgtattatccattccctggtttttccgacattgga
aattttcaatttgtgtctactacaattaatgttactcttggagcatatggaataccaatt
gcttgtattattttgacaaataagggacttcgtcaagtaaggaaaaatcagtttatgtct
gattcgacaaaagaaattgcgataaaatttatttatgggctgtttgttcagtcgatatta
ccagttgtttcatatataccaatggttacaagttatttatattctcaatatactggagaa
gaagtcctgatttctgagcacttgacccttggtactaactctctaccgggactcttagat
cccttcatatcattttattttgtgatgccgtttcgacaaacaattctaaactttcttttt
ccaatcaggcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATAATTCCATTCACTGCTCCAC 197 47 421 Antisense
TCCACGGGATTTCACTACTGTTCAA 374 587 441 Antisense
TTGTCTTTGTATTATCCATTCCCTG 142 709 499 Antisense
TATGGGCTGTTTGTTCAGTCGATAT 440 653 694 Antisense
CAGTCGATATTACCAGTTGTTTCAT 142 207 709 Antisense
GAAGTCCTGATTTCTGAGCACTTGA 31 337 781 Antisense
GAGCACTTGACCCTTGGTACTAACT 512 387 796 Antisense
TTGGTACTAACTCTCTACCGGGACT 604 665 809 Antisense
TACCGGGACTCTTAGATCCCTTCAT 149 651 824 Antisense
GATGCCGTTTCGACAAACAATTCTA 523 409 864 Antisense
AACTTTCTTTTTCCAATCAGGCAGC 190 139 889 Antisense
Sequence Source Affymetrix Proprietary Database