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[189432_at] 7TM chemoreceptor, str family

Description W06H8.7 /REP_DB=WormBase Gene ID /WP=CE26025 /GEN=str-206 /GB=AAK71874.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 93      4grp_total > 10      6grp_cgc > 99      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 22.9
(-2.2)
A 		19.1
(-2.5)
A 		14.1
(-3)
A 		80.6
(3)
P 		67
B 13.6
(-3)
A 		47.8
(-0.4)
A 		26.6
(-2)
A 		93.7
(3)
P 		80
C 47.3
(-2.2)
A 		49.4
(-2.1)
A 		26.6
(-3)
A 		184.1
(3)
P 		158
avr 27.9
(-2.7) 		38.8
(-2) 		22.4
(-3) 		119.5
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 27.2
(-0.9)
A 		10.4
(-3)
A 		57.5
(3)
P 		35.1
(0.1)
A 		53.5
(2.5)
P 		18.9
(-1.9)
A 		47
B 21.7
(-0.2)
A 		38.7
(2.5)
A 		15.3
(-1.2)
A 		4.2
(-3)
A 		41.9
(3)
P 		32.1
(1.4)
A 		38
C 36.8
(-0.2)
A 		71.3
(3)
P 		6
(-3)
A 		25
(-1.3)
A 		39.1
(0)
A 		20.7
(-1.6)
A 		65
avr 28.6
(-1.2) 		40.1
(1.8) 		26.3
(-1.7) 		21.4
(-3) 		44.8
(3) 		23.9
(-2.4) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 8.4
(0.5)
A 		4.1
(-2.7)
A 		3.7
(-3)
A 		11.8
(3)
P 		8
B 4.3
(-3)
A 		11.8
(-0.1)
A 		6.2
(-2.3)
A 		20
(3)
P 		16
C 15.7
(-1.2)
A 		14.2
(-1.6)
A 		9.3
(-3)
A 		31
(3)
P 		22
avr 9.5
(-1.7) 		10
(-1.5) 		6.4
(-3) 		20.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 5
(-2.4)
A 		3.7
(-3)
A 		12.5
(1.3)
P 		8.9
(-0.5)
A 		16.1
(3)
P 		4.6
(-2.6)
A 		12
B 7.5
(-0.6)
A 		12.9
(1.5)
A 		3.7
(-2)
A 		1.1
(-3)
A 		17
(3)
P 		12
(1.1)
A 		16
C 13.6
(0.6)
A 		21.8
(3)
P 		1.5
(-3)
A 		5
(-2)
A 		12.6
(0.3)
A 		6.9
(-1.4)
A 		20
avr 8.7
(-0.8) 		12.8
(1.6) 		5.9
(-2.5) 		5
(-3) 		15.2
(3) 		7.8
(-1.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11972
Sequence Type Exemplar sequence
Representative Public ID W06H8.7 NCBI
Target Description W06H8.7 /REP_DB=WormBase Gene ID /WP=CE26025 /GEN=str-206 /GB=AAK71874.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072193 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-206) (str-206) mRNA, complete cds. 11/11 None
SNAP00000002857 ENSEMBL cdna:SNAP chromosome:CEL140:V:6220959:6222156:1 11/11 None
W06H8.7 ENSEMBL cdna:known chromosome:CEL140:V:6220728:6222156:1 gene:W06H8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6220727-6222156(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-206
Ensembl W06H8.7
Entrez Gene 192029 Entrez gene
SwissProt Q966E9 EMBL-EBI
WormBase CE26025 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71874 Seven tm receptor protein 206 [Caenorhabditis elegans] ref|NP_504594.1| Seven TM Receptor family member (str-206) [Caenorhabditis elegans] 0.0
blast AAK71874 Seven tm receptor protein 206 [Caenorhabditis elegans] ref|NP_504594.1| Seven TM Receptor family member (str-206) [Caenorhabditis elegans] 1.0E-166
blast CAE71847 Hypothetical protein CBG18889 [Caenorhabditis briggsae] 1.0E-109
blast CAE71847 Hypothetical protein CBG18889 [Caenorhabditis briggsae] 1.0E-104
blast CAA92751 Hypothetical protein M7.13 [Caenorhabditis elegans] ref|NP_502071.1| Seven TM Receptor family member (str-3) [Caenorhabditis elegans] 4.0E-67
blast CAE64235 Hypothetical protein CBG08870 [Caenorhabditis briggsae] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.3E-14
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.4E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504594.1 7 10-32,45-67,91-113,133-155,202-224,250-272,287-309
W06H8.7 7 10-32,45-67,91-113,133-155,202-224,250-272,287-309
SNAP00000002857 6 21-43,58-80,93-112,125-147,173-195,210-232
Sequence
Target Sequence 
>C. ELEGANS:189432_AT
tattggtccgtatttctttgatgaaaatggtaaattcctattagattgggatgtattgat
aactttgtttggagcatctttgattatgggttcatctctctgtacaattttctattttgg
ctggaagtgttataaagcactatctgatctacaatcactctctagtggatattcaccaca
atatcgcgcactgcaaagacagtttttcgctgcattagtgtgtcaaactgtcattccaat
tagtctaatgcattttccacttcttatttcatattctggagcacttctgaacagaggatt
cggtcgattaagcaacctagcatctatcacaattgctttttaccctgctatagatccatt
gccaagcatattaatcatcaaaaactatcgagaaggtgttaaaaatttctgtttggctcc
aatccaatgctgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGGTCCGTATTTCTTTGATGAA 34 665 561 Antisense
TTATGGGTTCATCTCTCTGTACAAT 463 681 644 Antisense
GCACTATCTGATCTACAATCACTCT 39 317 697 Antisense
ACCACAATATCGCGCACTGCAAAGA 170 85 735 Antisense
GTTTTTCGCTGCATTAGTGTGTCAA 413 449 762 Antisense
GTGTGTCAAACTGTCATTCCAATTA 203 489 778 Antisense
ATTTTCCACTTCTTATTTCATATTC 278 15 812 Antisense
AAGCAACCTAGCATCTATCACAATT 548 151 870 Antisense
ATCACAATTGCTTTTTACCCTGCTA 625 27 886 Antisense
TACCCTGCTATAGATCCATTGCCAA 677 649 901 Antisense
GTTTGGCTCCAATCCAATGCTGTAT 173 453 971 Antisense
Sequence Source Affymetrix Proprietary Database