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[189431_at] 7TM chemoreceptor, srg family

Description Y25C1A.10 /REP_DB=WormBase Gene ID /WP=CE21478 /TR=Q9TYL7 /GB=AAD12845.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 44      4grp_total > 04      6grp_cgc > 91      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 4.2
(-2.6)
A 		2.2
(-3)
A 		2.4
(-3)
A 		35.7
(3)
A 		34
B 5.3
(3)
A 		4.5
(0.6)
A 		4.2
(-0.3)
A 		3.3
(-3)
A 		2
C 9
(3)
A 		4.7
(-1.1)
A 		3.3
(-2.4)
A 		2.7
(-3)
A 		6
avr 6.2
(-1.4) 		3.8
(-2.7) 		3.3
(-3) 		13.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 26.9
(1.2)
A 		4.3
(-2.6)
A 		37.6
(3)
A 		4.1
(-2.7)
A 		2.1
(-3)
A 		25.9
(1)
A 		36
B 13.4
(0.9)
A 		19.8
(3)
A 		16.4
(1.9)
A 		1.6
(-3)
A 		13.9
(1.1)
A 		1.7
(-3)
A 		18
C 2.2
(-2.9)
A 		10.8
(-0.2)
A 		5.2
(-2)
A 		20.6
(3)
A 		2
(-3)
A 		2.7
(-2.8)
A 		19
avr 14.2
(0.6) 		11.6
(-0.5) 		19.7
(3) 		8.8
(-1.8) 		6
(-3) 		10.1
(-1.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.5
(-1.7)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		5.2
(3)
A 		5
B 1.7
(3)
A 		1.1
(-0.6)
A 		1
(-1.2)
A 		0.7
(-3)
A 		1
C 3
(3)
A 		1.4
(-0.8)
A 		1.1
(-1.6)
A 		0.5
(-3)
A 		3
avr 2.1
(3) 		1
(-2.5) 		0.9
(-3) 		2.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 5
(0.5)
A 		1.5
(-2.3)
A 		8.2
(3)
A 		1
(-2.7)
A 		0.6
(-3)
A 		6.3
(1.5)
A 		8
B 4.7
(1.2)
A 		6.6
(3)
A 		4
(0.5)
A 		0.4
(-3)
A 		5.7
(2.1)
A 		0.6
(-2.8)
A 		6
C 0.8
(-2.7)
A 		3.3
(1.6)
A 		1.3
(-1.8)
A 		4.1
(3)
A 		0.6
(-3)
A 		0.9
(-2.5)
A 		4
avr 3.5
(0.8) 		3.8
(1.4) 		4.5
(3) 		1.8
(-3) 		2.3
(-1.9) 		2.6
(-1.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4197
Sequence Type Exemplar sequence
Representative Public ID Y25C1A.10 NCBI
Target Description Y25C1A.10 /REP_DB=WormBase Gene ID /WP=CE21478 /TR=Q9TYL7 /GB=AAD12845.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062042 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-22) (srg-22) mRNA, complete cds. 11/11 None
GENEFINDER00000041894 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3089898:3100641:-1 9/11 None
Y25C1A.10 ENSEMBL cdna:known chromosome:CEL140:II:3091498:3093447:-1 gene:Y25C1A.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041881 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3091496-3093446(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-22
Ensembl Y25C1A.10
Entrez Gene 189539 Entrez gene
SwissProt Q9TYL7 EMBL-EBI
WormBase CE33209 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494443 Serpentine Receptor, class G (gamma) family member (srg-22) [Caenorhabditis elegans] gb|AAD12845.2| Serpentine receptor, class g (gamma) protein 22 [Caenorhabditis elegans] 1.0E-180
blast NP_494445 Serpentine Receptor, class G (gamma) family member (srg-24) [Caenorhabditis elegans] gb|AAD12842.2| Serpentine receptor, class g (gamma) protein 24 [Caenorhabditis elegans] 1.0E-145
blast NP_494445 Serpentine Receptor, class G (gamma) family member (srg-24) [Caenorhabditis elegans] gb|AAD12842.2| Serpentine receptor, class g (gamma) protein 24 [Caenorhabditis elegans] 1.0E-138
blast NP_494442 Serpentine Receptor, class G (gamma) family member (srg-21) [Caenorhabditis elegans] gb|AAD12840.2| Serpentine receptor, class g (gamma) protein 21 [Caenorhabditis elegans] 1.0E-128
blast NP_494443 Serpentine Receptor, class G (gamma) family member (srg-22) [Caenorhabditis elegans] gb|AAD12845.2| Serpentine receptor, class g (gamma) protein 22 [Caenorhabditis elegans] 1.0E-118
blast NP_494442 Serpentine Receptor, class G (gamma) family member (srg-21) [Caenorhabditis elegans] gb|AAD12840.2| Serpentine receptor, class g (gamma) protein 21 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 7.1E-92
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 5.2E-45
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 3.3E-68
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 2.5E-24
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 3.1E-53
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 4.3E-116
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494443.2 7 32-54,67-89,104-126,159-181,201-223,243-265,275-297
Y25C1A.10 7 32-54,67-89,104-126,159-181,201-223,243-265,275-297
GENEFINDER00000041894 15 32-54,67-89,160-182,203-225,240-257,476-498,523-545,557-579,610-632,645-667,737-759,780-802,965-987,1090-1112,1158-1180
Sequence
Target Sequence 
>C. ELEGANS:189431_AT
gtactaccaattcgacatgcaacgttatggaaaagaatactgaagccgatactgatcatt
caacacctgttccctctcggcgtaatctggaatattctactatcaagagtgtatactaat
ccaagtggttacgggttttctgtcaactacaaggcagcgattccatgggccaacgtttct
cttctgaacctgttccactgtatcccatgtgttgtactggttaccatattttttatagtt
actatttatggcctaacaatgttggaatatagaatcaaaaatgttgagcgacacctgaca
atattcacattaataatgggtttgcagacgacgttgttcgcatttacacagatctacttt
gccttcttcactgcctacctcccaggcagccaagctttcatctactttgccttcctcgcc
acctatatcccaagtattcgcgggtacatactcttactcgcattccacatattcgatatt
ctccatgtctacagcccgatagcactcctaatatcaaatcgagaattaagaaacgacatt
ttcagattgaaaaaggagaatggagggtatgcagctggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTACCAATTCGACATGCAACGT 23 459 439 Antisense
AAGAATACTGAAGCCGATACTGATC 511 151 471 Antisense
GATACTGATCATTCAACACCTGTTC 146 425 486 Antisense
CTCTCGGCGTAATCTGGAATATTCT 391 229 512 Antisense
CTCTTCTGAACCTGTTCCACTGTAT 438 227 617 Antisense
TGAGCGACACCTGACAATATTCACA 606 569 723 Antisense
CACCTATATCCCAAGTATTCGCGGG 564 201 858 Antisense
TTCGCGGGTACATACTCTTACTCGC 502 697 875 Antisense
TCTTACTCGCATTCCACATATTCGA 611 615 890 Antisense
ATTCGATATTCTCCATGTCTACAGC 550 9 909 Antisense
GGAGAATGGAGGGTATGCAGCTGGC 476 519 993 Antisense
Sequence Source Affymetrix Proprietary Database