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[189429_at] oxidoreductase

Description F20D6.11 /REP_DB=WormBase Gene ID /WP=CE27373 /TR=Q19655 /GB=AAB37054.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=oxidoreductase
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_high_8_8 > 51      6grp_highest_nonorm > 53      6grp_total > 62      4grp_total > 61      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 348
1 2 3 4 range
A 503.7
(3)
P 		492.2
(2.8)
P 		431.6
(1.8)
P 		156.2
(-3)
M 		348
B 491.2
(3)
P 		411.6
(1.6)
P 		486.5
(2.9)
P 		160.4
(-3)
P 		331
C 500.6
(3)
P 		458.7
(2.3)
P 		469
(2.4)
P 		165.3
(-3)
P 		335
avr 498.5
(3) 		454.2
(2.2) 		462.4
(2.4) 		160.6
(-3) 		338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 843
1 2 3 4 5 6 range
A 565.1
(-3)
P 		719.5
(-1.9)
P 		1243.3
(1.8)
P 		1408
(3)
P 		657.2
(-2.3)
P 		731.4
(-1.8)
P 		843
B 590.8
(-2.8)
P 		688.6
(-2)
P 		1293.3
(3)
P 		1139.1
(1.7)
P 		594
(-2.8)
P 		566.6
(-3)
P 		727
C 728.8
(-2)
P 		746.1
(-1.9)
P 		1378.5
(3)
P 		1181.4
(1.5)
P 		756.7
(-1.8)
P 		603.1
(-3)
P 		775
avr 628.2
(-3) 		718.1
(-2.2) 		1305
(3) 		1242.8
(2.4) 		669.3
(-2.6) 		633.7
(-3) 		677
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 183.4
(3)
P 		106.8
(0.1)
P 		112.8
(0.4)
P 		22.9
(-3)
M 		161
B 156.6
(3)
P 		101.7
(0.3)
P 		112.7
(0.8)
P 		34.2
(-3)
P 		122
C 165.7
(3)
P 		131.9
(1.5)
P 		163.5
(2.9)
P 		27.9
(-3)
P 		138
avr 168.6
(3) 		113.5
(0.6) 		129.7
(1.3) 		28.3
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 104.2
(-3)
P 		255.9
(0.6)
P 		270.8
(1)
P 		357.1
(3)
P 		198.3
(-0.8)
P 		178.1
(-1.2)
P 		253
B 205.6
(-3)
P 		229.2
(-1.7)
P 		314
(3)
P 		301.7
(2.3)
P 		241.3
(-1)
P 		211.3
(-2.7)
P 		108
C 270.1
(-0.3)
P 		227.7
(-2)
P 		350.9
(3)
P 		237.6
(-1.6)
P 		244.9
(-1.3)
P 		201.9
(-3)
P 		149
avr 193.3
(-3) 		237.6
(-0.8) 		311.9
(3) 		298.8
(2.3) 		228.2
(-1.2) 		197.1
(-2.8) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189429_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11761
Sequence Type Exemplar sequence
Representative Public ID F20D6.11 NCBI
Target Description F20D6.11 /REP_DB=WormBase Gene ID /WP=CE27373 /TR=Q19655 /GB=AAB37054.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=oxidoreductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072711 NCBI Caenorhabditis elegans F20D6.11 (oxidoreductase) mRNA, complete cds. 11/11 A 
SNAP00000021023 ENSEMBL cdna:SNAP chromosome:CEL140:V:8199872:8201675:-1 11/11 None
GENEFINDER00000021036 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8199981:8201675:-1 9/11 None
F20D6.11.1 ENSEMBL cdna:known chromosome:CEL140:V:8199376:8201685:-1 gene:F20D6.11 11/11 A 
F20D6.11.2 ENSEMBL cdna:known chromosome:CEL140:V:8199402:8201680:-1 gene:F20D6.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8199612-8201482(-) 100.0 100.0
Public Domain and Genome References
Gene Title oxidoreductase
Ensembl F20D6.11
Entrez Gene 179196 Entrez gene
SwissProt Q19655 EMBL-EBI
WormBase CE27373 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.23332.1.S1_S_AT similar to apoptosis-inducing factor like isoform 1 cfa
DROSOPHILA_2:1641370_S_AT dm
DROSGENOME1:143005_AT dm
CHICKEN:GGA.18742.1.S1_AT similar to Nfrl gga
CHICKEN:GGA.18742.1.S1_X_AT similar to Nfrl gga
CHICKEN:GGAAFFX.22341.1.S1_AT similar to Nfrl gga
CHICKEN:GGAAFFX.4807.1.S1_S_AT similar to Nfrl gga
U133_X3P:HS.163543.0.A1_3P_AT apoptosis-inducing factor like hs
HG-U133_PLUS_2:244084_AT apoptosis-inducing factor like hs
HG-U133B:244084_AT apoptosis-inducing factor like hs
HG-U95E:84071_AT apoptosis-inducing factor like hs
MG-U74CV2:165745_AT RIKEN cDNA 2810401C16 gene mm
MG-U74CV2:170799_AT RIKEN cDNA 2810401C16 gene mm
MOE430B:1431923_AT RIKEN cDNA 2810401C16 gene mm
MOUSE430_2:1431923_AT RIKEN cDNA 2810401C16 gene mm
MOE430B:1434742_S_AT RIKEN cDNA 2810401C16 gene mm
MOUSE430_2:1434742_S_AT RIKEN cDNA 2810401C16 gene mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15036 disulfide oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37054 Hypothetical protein F20D6.11 [Caenorhabditis elegans] ref|NP_505112.1| F20D6.11 [Caenorhabditis elegans] 0.0
blast CAE66107 Hypothetical protein CBG11327 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005806 EMBL-EBI Rieske [2Fe-2S] domain 4.5E-15
Pfam IPR001327 EMBL-EBI FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.3E-74
Pfam IPR005806 EMBL-EBI Rieske [2Fe-2S] domain 1.7E-12
Pfam IPR001327 EMBL-EBI FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.3E-74
Sequence
Target Sequence 
>C. ELEGANS:189429_AT
ggagtaaagttcgagctggctgcaaatgtggttgctcttcgtggaaacgatcaaggagaa
gtctcaaaagttattttagagaatggaaaagagcttgatgtagatcttcttgtttgtgga
attggtgttaccccagccactaagtttttggaaggatctggtatcaaattggacaataga
ggattcattgaagttgatgaaaagtttagaactaatatcagctacatcttcgcaatgggt
gatgttgtcacagctcctctcccactttgggatattgacagtatcaatattcaacacttc
caaactgctcaagcacatggacaacatcttggatacactattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTAAAGTTCGAGCTGGCTGCAA 303 515 973 Antisense
GCTGCAAATGTGGTTGCTCTTCGTG 439 297 991 Antisense
GTTGCTCTTCGTGGAAACGATCAAG 327 439 1003 Antisense
GAGCTTGATGTAGATCTTCTTGTTT 368 389 1063 Antisense
GTGGAATTGGTGTTACCCCAGCCAC 206 491 1088 Antisense
ATCAGCTACATCTTCGCAATGGGTG 189 27 1189 Antisense
ATGGGTGATGTTGTCACAGCTCCTC 154 51 1207 Antisense
GCTCCTCTCCCACTTTGGGATATTG 327 297 1225 Antisense
ATATTCAACACTTCCAAACTGCTCA 308 19 1259 Antisense
ACTGCTCAAGCACATGGACAACATC 624 95 1276 Antisense
GGACAACATCTTGGATACACTATTG 223 527 1291 Antisense
Sequence Source Affymetrix Proprietary Database