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[189428_at] ABC transpoter

Description F02E11.1 /REP_DB=WormBase Gene ID /WP=CE09192 /TR=O16574 /GB=AAB66050.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ABC transpoter
Cluster 6grp_total > 89      4grp_total > 26      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 5
(-2.7)
A 		31
(3)
A 		3.8
(-3)
A 		8.4
(-2)
A 		27
B 6.5
(-2.3)
A 		4.2
(-3)
A 		10.8
(-1.1)
A 		25.4
(3)
A 		21
C 8.8
(-2.3)
A 		37.6
(1.9)
A 		4.2
(-3)
A 		45.1
(3)
A 		41
avr 6.8
(-2.9) 		24.3
(2.4) 		6.3
(-3) 		26.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 24.4
(-1.2)
A 		4.6
(-3)
A 		4.4
(-3)
A 		9.3
(-2.6)
A 		50.1
(1.1)
A 		70.9
(3)
A 		67
B 5.1
(-2.6)
A 		5.4
(-2.6)
A 		8.1
(-2.2)
A 		2.3
(-3)
A 		48.3
(3)
A 		44.4
(2.5)
A 		46
C 8.2
(-2.7)
A 		12
(-2)
A 		6.4
(-3)
A 		7.2
(-2.9)
A 		24.9
(0.2)
A 		41.4
(3)
A 		35
avr 12.6
(-2.2) 		7.3
(-2.9) 		6.3
(-3) 		6.3
(-3) 		41.1
(1.5) 		52.2
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.8
(-2.2)
A 		6.7
(3)
A 		1
(-3)
A 		1.2
(-2.8)
A 		6
B 2.1
(-1.5)
A 		1
(-3)
A 		2.5
(-1)
A 		5.4
(3)
A 		4
C 2.9
(-2.1)
A 		10.8
(3)
A 		1.5
(-3)
A 		7.6
(0.9)
A 		9
avr 2.3
(-2.2) 		6.2
(3) 		1.7
(-3) 		4.7
(1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.5
(-1.7)
A 		1.7
(-2.7)
A 		1
(-3)
A 		2.3
(-2.5)
A 		15.1
(2.2)
A 		17.3
(3)
A 		16
B 1.8
(-2.6)
A 		1.8
(-2.6)
A 		2
(-2.6)
A 		0.6
(-3)
A 		19.6
(3)
A 		16.6
(2.1)
A 		19
C 3
(-2.2)
A 		3.7
(-1.9)
A 		1.6
(-2.9)
A 		1.4
(-3)
A 		8.1
(0.2)
A 		13.9
(3)
A 		13
avr 3.1
(-2.3) 		2.4
(-2.6) 		1.5
(-3) 		1.4
(-3) 		14.3
(2.3) 		15.9
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189428_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5249
Sequence Type Exemplar sequence
Representative Public ID F02E11.1 NCBI
Target Description F02E11.1 /REP_DB=WormBase Gene ID /WP=CE09192 /TR=O16574 /GB=AAB66050.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ABC transpoter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062094 NCBI Caenorhabditis elegans F02E11.1 (F02E11.1) mRNA, complete cds. 11/11 None
SNAP00000013528 ENSEMBL cdna:SNAP chromosome:CEL140:II:3278983:3281671:1 11/11 None
F02E11.1 ENSEMBL cdna:known chromosome:CEL140:II:3279483:3281671:1 gene:F02E11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013532 7/11 Cross Hyb Matching Probes None
GENEFINDER00000013534 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3279208-3281670(+) 100.0 100.0
Public Domain and Genome References
Gene Title ABC transpoter
Ensembl F02E11.1
Entrez Gene 173671 Entrez gene
SwissProt O16574 EMBL-EBI
WormBase CE36815 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260144_AT ABC transporter family protein at
CANINE_2:CFAAFFX.18989.1.S1_AT similar to ATP-binding cassette, sub-family G, member 4 cfa
DROSOPHILA_2:1629559_S_AT ABC transporter expressed in trachea dm
DROSGENOME1:143941_AT ABC transporter expressed in trachea dm
CHICKEN:GGAAFFX.4226.1.S1_AT similar to ATP-binding cassette, sub-family G, member 4 gga
HG-U133_PLUS_2:207593_AT ATP-binding cassette, sub-family G (WHITE), member 4 hs
HG-U133A:207593_AT ATP-binding cassette, sub-family G (WHITE), member 4 hs
HG-FOCUS:207593_AT ATP-binding cassette, sub-family G (WHITE), member 4 hs
HG-U133A_2:207593_AT ATP-binding cassette, sub-family G (WHITE), member 4 hs
U133_X3P:G11545923_3P_AT ATP-binding cassette, sub-family G (WHITE), member 4 hs
MOE430A:1424437_S_AT ATP-binding cassette, sub-family G (WHITE), member 4 mm
MOUSE430A_2:1424437_S_AT ATP-binding cassette, sub-family G (WHITE), member 4 mm
MOUSE430_2:1424437_S_AT ATP-binding cassette, sub-family G (WHITE), member 4 mm
MOUSE430_2:1427732_S_AT ATP-binding cassette, sub-family G (WHITE), member 4 mm
MOE430A:1427732_S_AT ATP-binding cassette, sub-family G (WHITE), member 4 mm
MOUSE430A_2:1427732_S_AT ATP-binding cassette, sub-family G (WHITE), member 4 mm
MG-U74BV2:116690_AT ATP-binding cassette, sub-family G (WHITE), member 4 mm
RAE230A:1376172_AT ATP-binding cassette, sub-family G (WHITE), member 4 (predicted) rn
RAT230_2:1376172_AT ATP-binding cassette, sub-family G (WHITE), member 4 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66050 Hypothetical protein F02E11.1 [Caenorhabditis elegans] ref|NP_494495.2| F02E11.1 [Caenorhabditis elegans] 0.0
blast CAE60679 Hypothetical protein CBG04332 [Caenorhabditis briggsae] 0.0
blast CAE73643 Hypothetical protein CBG21143 [Caenorhabditis briggsae] 1.0E-130
blast CAE73643 Hypothetical protein CBG21143 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 8.6E-41
Pfam IPR003439 EMBL-EBI ABC transporter 1.9E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494495.2 4 389-411,416-438,453-475,537-559
F02E11.1 4 389-411,416-438,453-475,537-559
SNAP00000013528 4 523-545,550-572,587-609,671-693
Sequence
Target Sequence 
>C. ELEGANS:189428_AT
tgaactcccccaatatacgattctcccgatgatctatggcacgattatatactggatggc
cggactggttgcctcggtgaccagcttcttggtttttgtattcgtttgtatcacgctgac
ctgggtcgctgtgtcgattgcctacgttggagcttgcatctttggtgacgaaggactcgt
ggtgactttcatgccgatgttcgtgcttccgatgctcgtctttggaggattctacgtaaa
cgccaactcaattcctgtctactaccaatacgtttccttcgtctcctggttcaagcacgg
attcgaagctctcgaagccaaccagtggaaggagattgataagatttctggctgcgacct
aatcaatccattgaatgcgacaacaactggctactgcccagcatccgatggtcctggcat
tttgacacgtcgtggaattgatactccgttgtatgcgaatgttctgattctcttcatgtc
cttcttcgtctatcgcatcattgggctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACTCCCCCAATATACGATTCTC 650 573 1446 Antisense
ACGATTCTCCCGATGATCTATGGCA 95 95 1462 Antisense
CTGTGTCGATTGCCTACGTTGGAGC 566 239 1574 Antisense
GACTCGTGGTGACTTTCATGCCGAT 399 373 1619 Antisense
TAAACGCCAACTCAATTCCTGTCTA 681 639 1682 Antisense
TGTCTACTACCAATACGTTTCCTTC 237 557 1701 Antisense
GTCTCCTGGTTCAAGCACGGATTCG 293 469 1726 Antisense
TTTCTGGCTGCGACCTAATCAATCC 141 671 1790 Antisense
AATGCGACAACAACTGGCTACTGCC 615 165 1819 Antisense
GATGGTCCTGGCATTTTGACACGTC 699 407 1852 Antisense
TTCGTCTATCGCATCATTGGGCTCG 607 695 1930 Antisense
Sequence Source Affymetrix Proprietary Database