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[189427_at] YJU2 protein

Description ZK1307.9 /REP_DB=WormBase Gene ID /WP=CE01697 /TR=SW:Q09651 /GB=CAA87435.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=YJU2 protein
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 94      6grp_total > 78      4grp_total > 30      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 568.7
(3)
P 		387.2
(-3)
P 		429.7
(-1.6)
P 		503.2
(0.8)
P 		182
B 557.1
(3)
P 		438.2
(-1.3)
P 		392.5
(-3)
P 		537.8
(2.3)
P 		165
C 532.4
(3)
P 		470.5
(1.1)
P 		337.1
(-3)
P 		474.2
(1.2)
P 		195
avr 552.7
(3) 		432
(-1.4) 		386.4
(-3) 		505.1
(1.3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 463.5
(-2.1)
P 		490.2
(-1.7)
P 		390.4
(-3)
P 		425.8
(-2.5)
P 		516.3
(-1.4)
P 		862.1
(3)
P 		472
B 484.6
(-0.8)
P 		367.7
(-2.8)
P 		355.8
(-3)
P 		396.8
(-2.3)
P 		497.3
(-0.5)
P 		699.4
(3)
P 		344
C 542.5
(-0.9)
P 		383.9
(-3)
P 		494.1
(-1.5)
P 		413.4
(-2.6)
P 		634.5
(0.4)
P 		827.8
(3)
P 		444
avr 496.9
(-1.7) 		413.9
(-3) 		413.4
(-3) 		412
(-3) 		549.4
(-0.9) 		796.4
(3) 		384
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 207.1
(3)
P 		84
(-2.5)
P 		112.3
(-1.3)
P 		73.7
(-3)
P 		133
B 177.7
(3)
P 		108.2
(-1.8)
P 		91
(-3)
P 		114.6
(-1.4)
P 		87
C 176.2
(3)
P 		135.3
(0.4)
P 		117.5
(-0.7)
P 		80
(-3)
P 		96
avr 187
(3) 		109.2
(-1.8) 		106.9
(-1.9) 		89.4
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 85.4
(-3)
P 		174.4
(1.3)
P 		85
(-3)
P 		108
(-1.9)
P 		155.8
(0.4)
P 		209.9
(3)
P 		125
B 168.6
(-0.2)
P 		122.4
(-1.8)
P 		86.4
(-3)
P 		105.1
(-2.4)
P 		202.1
(1)
P 		260.8
(3)
P 		174
C 201.1
(0.6)
P 		117.1
(-1.9)
P 		125.8
(-1.7)
P 		83.1
(-3)
P 		205.3
(0.8)
P 		277.1
(3)
P 		194
avr 151.7
(-0.9) 		138
(-1.4) 		99.1
(-3) 		98.7
(-3) 		187.7
(0.5) 		249.3
(3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189427_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4029
Sequence Type Exemplar sequence
Representative Public ID ZK1307.9 NCBI
Target Description ZK1307.9 /REP_DB=WormBase Gene ID /WP=CE01697 /TR=SW:Q09651 /GB=CAA87435.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=YJU2 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063676(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063676 NCBI Caenorhabditis elegans ZK1307.9 (ZK1307.9) mRNA, complete cds. 11/11 None
SNAP00000021424 ENSEMBL cdna:SNAP chromosome:CEL140:II:9649402:9650798:1 11/11 None
GENEFINDER00000021432 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9649402:9650798:1 11/11 None
ZK1307.9 ENSEMBL cdna:known chromosome:CEL140:II:9649402:9650803:1 gene:ZK1307.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9649398-9650795(+) 100.0 100.0
Public Domain and Genome References
Gene Title YJU2 protein
Ensembl ZK1307.9
Entrez Gene 174518 Entrez gene
SwissProt Q09651 EMBL-EBI
WormBase CE01697 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245751_S_AT cell cycle control protein-related at
CANINE_2:CFA.16977.1.S1_AT similar to CG15084-PA cfa
CANINE_2:CFA.18426.1.S1_S_AT similar to CG15084-PA cfa
CANINE_2:CFAAFFX.25440.1.S1_AT similar to CG15084-PA cfa
DROSOPHILA_2:1632748_AT dm
DROSGENOME1:153036_AT dm
HG-U133_PLUS_2:208094_S_AT hypothetical protein MGC10471 hs
HG-U133A:208094_S_AT hypothetical protein MGC10471 hs
HG-U133A_2:208094_S_AT hypothetical protein MGC10471 hs
HUGENEFL:X13956_AT hypothetical protein MGC10471 hs
U133_X3P:G13540613_3P_S_AT hypothetical protein MGC10471 hs
HG-U95AV2:35135_AT hypothetical protein MGC10471 hs
MG-U74AV2:104485_AT RIKEN cDNA 4930527D15 gene mm
MOUSE430A_2:1452523_A_AT RIKEN cDNA 4930527D15 gene mm
MOUSE430_2:1452523_A_AT RIKEN cDNA 4930527D15 gene mm
MOE430A:1452523_A_AT RIKEN cDNA 4930527D15 gene mm
MU11KSUBA:AA396448_S_AT RIKEN cDNA 4930527D15 gene mm
MG-U74CV2:171575_AT RIKEN cDNA 4930527D15 gene mm
MU19KSUBC:TC38419_AT RIKEN cDNA 4930527D15 gene (4930527D15Rik), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87435 Hypothetical protein ZK1307.9 [Caenorhabditis elegans] ref|NP_496077.1| ZK1307.9 [Caenorhabditis elegans] sp|Q09651|YS19_CAEEL Hypothetical protein ZK1307.9 in chromosome III 1.0E-172
blast CAE58001 Hypothetical protein CBG01066 [Caenorhabditis briggsae] 1.0E-137
blast AAK37425 putative SB115 protein [Homo sapiens] ref|NP_110445.1| hypothetical protein LOC81576 [Homo sapiens] gb|AAH02905.1| Hypothetical protein MGC10471 [Homo sapiens] 8.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR007590 EMBL-EBI Protein of unknown function DUF572 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189427_AT
atccctcaacgaaactcgtgctcgagatgcgaatcttcgtgataaactatccattggaac
gactcaattattaccagaaacagaagaggatcgacggatagcgtctatgatgacaagata
tcgagatacaaaaactcacgatgatcacctcgaatcttcccgcgatcgaatcgaatcacg
taggatcttcagacgaccggaagaaactgacacaccatccacgtcttctggatcttctgg
aggcgctgttccatccgcttccgaacgattgaaggctacaatgaaagcagagagagataa
acgaatcaatgcctcattttcaactgctggaacatcatccgcgactcagaaacttttagg
aatcaagagaaaatcagcttcgtctctgggtgttcaaattaaaaaagccgctccggaaaa
ctcaagtctccaagatgaagaacctgcagtggagaagccaaacatttcaaacccaatctc
actta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCCTCAACGAAACTCGTGCTCGA 154 39 597 Antisense
TCGAATCTTCCCGCGATCGAATCGA 544 599 746 Antisense
CACGTAGGATCTTCAGACGACCGGA 551 195 773 Antisense
GGAAGAAACTGACACACCATCCACG 291 531 795 Antisense
TTCCATCCGCTTCCGAACGATTGAA 537 687 845 Antisense
CAATGCCTCATTTTCAACTGCTGGA 666 181 903 Antisense
CAACTGCTGGAACATCATCCGCGAC 417 187 917 Antisense
ATCATCCGCGACTCAGAAACTTTTA 683 29 930 Antisense
AAAATCAGCTTCGTCTCTGGGTGTT 445 133 966 Antisense
CCGCTCCGGAAAACTCAAGTCTCCA 108 263 1004 Antisense
AACATTTCAAACCCAATCTCACTTA 564 137 1057 Antisense
Sequence Source Affymetrix Proprietary Database