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[189426_at] Ubiquitin family

Description C49C3.3 /REP_DB=WormBase Gene ID /WP=CE19742 /TR=Q9XUG4 /GB=CAB05154.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Ubiquitin family
Cluster 6grp_total > 11      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 37.1
(-3)
A 		54.5
(-1.3)
A 		99.2
(3)
A 		94.8
(2.6)
M 		62
B 44.9
(1.2)
A 		56.6
(2.6)
A 		10.1
(-3)
A 		60.3
(3)
P 		50
C 46.4
(-3)
P 		85.3
(2.5)
A 		47.6
(-2.8)
A 		88.9
(3)
M 		43
avr 42.8
(-3) 		65.5
(0.5) 		52.3
(-1.5) 		81.3
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 6
(-3)
A 		63.1
(3)
A 		59.3
(2.6)
A 		52.6
(1.9)
A 		48.7
(1.5)
A 		17.8
(-1.8)
A 		57
B 54.6
(3)
A 		45.1
(1.9)
A 		14.8
(-1.8)
A 		18.9
(-1.3)
A 		4.4
(-3)
A 		22.1
(-0.9)
A 		50
C 48.9
(-1.7)
A 		87.5
(3)
P 		45.1
(-2.1)
A 		58.4
(-0.5)
A 		38
(-3)
A 		47.2
(-1.9)
A 		50
avr 36.5
(-1.8) 		65.2
(3) 		39.7
(-1.2) 		43.3
(-0.6) 		30.4
(-2.8) 		29
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 13.5
(-2.3)
A 		11.8
(-3)
A 		25.9
(3)
A 		13.9
(-2.1)
M 		14
B 14.3
(3)
A 		14
(2.9)
A 		2.3
(-3)
A 		12.9
(2.3)
P 		12
C 15.4
(-2.7)
P 		24.5
(3)
A 		16.6
(-2)
A 		15
(-3)
M 		10
avr 14.4
(-2) 		16.8
(3) 		14.9
(-0.9) 		13.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.1
(-3)
A 		22.5
(3)
A 		12.9
(0.3)
A 		13.3
(0.4)
A 		14.7
(0.8)
A 		4.3
(-2.1)
A 		21
B 19
(3)
A 		15
(1.6)
A 		3.6
(-2.4)
A 		5
(-1.9)
A 		1.8
(-3)
A 		8.3
(-0.7)
A 		17
C 18.1
(-0.4)
A 		26.7
(3)
P 		11.5
(-3)
A 		11.7
(-2.9)
A 		12.3
(-2.7)
A 		15.8
(-1.3)
A 		15
avr 12.7
(-1.3) 		21.4
(3) 		9.3
(-3) 		10
(-2.7) 		9.6
(-2.9) 		9.5
(-2.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189426_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10296
Sequence Type Exemplar sequence
Representative Public ID C49C3.3 NCBI
Target Description C49C3.3 /REP_DB=WormBase Gene ID /WP=CE19742 /TR=Q9XUG4 /GB=CAB05154.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Ubiquitin family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070678 NCBI Caenorhabditis elegans C49C3.3 (C49C3.3) mRNA, complete cds. 11/11 None
GENEFINDER00000040214 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17318504:17319982:-1 11/11 None
C49C3.3 ENSEMBL cdna:known chromosome:CEL140:IV:17318504:17319982:-1 gene:C49C3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040193 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17318509-17319988(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ubiquitin family
Ensembl C49C3.3
Entrez Gene 183597 Entrez gene
SwissProt Q9XUG4 EMBL-EBI
WormBase CE19742 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05154 Hypothetical protein C49C3.3 [Caenorhabditis elegans] ref|NP_503079.1| C49C3.3 [Caenorhabditis elegans] 5.0E-39
Sequence
Target Sequence 
>C. ELEGANS:189426_AT
ggttttcgtgaagccactctacagaactttgttcttcgatgtcgccgccaacaacgatgt
ctcgagcaccaagcaaaacaacgaagccatggcggaatcccagtcaaggagcagagactc
tgctatgccgcttctcggaggactcaagaaaaggaagaagaaggcctacaccattacaaa
gaggaaaaatagaaggtcaagtacgccgtcctcaagtacttcaagaacgacaagaacggc
aagatcacacgtcttagcaagggatatcatgagccatcattcggagggaagccttcatga
cccagctcaccacactgcggatctcttcgaagatgtccaaacatcctcgtcattgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTTCGTGAAGCCACTCTACAGA 195 505 15 Antisense
CAGAACTTTGTTCTTCGATGTCGCC 579 203 36 Antisense
GCCAACAACGATGTCTCGAGCACCA 178 279 61 Antisense
GCCATGGCGGAATCCCAGTCAAGGA 497 279 100 Antisense
GAAGAAGGCCTACACCATTACAAAG 520 339 171 Antisense
TAGAAGGTCAAGTACGCCGTCCTCA 260 641 204 Antisense
GCCGTCCTCAAGTACTTCAAGAACG 168 283 219 Antisense
GAACGGCAAGATCACACGTCTTAGC 381 347 248 Antisense
GAGCCATCATTCGGAGGGAAGCCTT 139 385 285 Antisense
CACACTGCGGATCTCTTCGAAGATG 607 191 325 Antisense
ATGTCCAAACATCCTCGTCATTGAC 448 47 347 Antisense
Sequence Source Affymetrix Proprietary Database