[Home] | [Total List]

[189425_s_at] G2/M Cyclin A

Description ZK507.6 /REP_DB=WormBase Gene ID /WP=CE03820 /TR=SW:P34638 /GB=CAA82372.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=G2-M Cyclin A
Cluster 6grp_high1_10_10 > 77      6grp_total > 78      4grp_total > 53      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 317.6
(3)
P 		208.4
(-3)
A 		224.3
(-2.1)
A 		210.5
(-2.9)
A 		109
B 265.6
(1.3)
P 		308.2
(3)
A 		236.6
(0.1)
M 		160.4
(-3)
P 		148
C 299.5
(3)
P 		293.2
(2.7)
A 		245.7
(0.2)
P 		183.9
(-3)
A 		116
avr 294.2
(3) 		269.9
(1.7) 		235.5
(-0.2) 		184.9
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 146.9
(-3)
P 		277.6
(-0.2)
P 		175.9
(-2.4)
P 		255.7
(-0.7)
P 		292.3
(0.1)
P 		430.4
(3)
P 		284
B 211.7
(-2.7)
P 		261.3
(-1)
P 		201.8
(-3)
P 		204.2
(-2.9)
P 		258.6
(-1.1)
P 		380.4
(3)
P 		179
C 248.2
(-1.5)
P 		284.7
(1.4)
P 		228.8
(-3)
M 		248.6
(-1.4)
P 		258.3
(-0.7)
P 		304.3
(3)
P 		76
avr 202.3
(-3) 		274.5
(-0.4) 		202.2
(-3) 		236.2
(-1.8) 		269.7
(-0.6) 		371.7
(3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 115.6
(3)
P 		45.2
(-2)
A 		58.6
(-1)
A 		30.8
(-3)
A 		85
B 84.7
(3)
P 		76.1
(2)
A 		54.8
(-0.6)
M 		34.2
(-3)
P 		51
C 99.1
(3)
P 		84.3
(1.7)
A 		85.6
(1.8)
P 		31
(-3)
A 		68
avr 99.8
(3) 		68.5
(0.2) 		66.3
(0) 		32
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 27.1
(-3)
P 		98.7
(2.5)
P 		38.3
(-2.1)
P 		64.8
(-0.1)
P 		88.2
(1.7)
P 		104.8
(3)
P 		78
B 73.7
(-1.4)
P 		87
(-0.5)
P 		49
(-3)
P 		54.1
(-2.7)
P 		105
(0.6)
P 		141.9
(3)
P 		93
C 92
(1.9)
P 		86.9
(1.3)
P 		58.2
(-2.1)
M 		50
(-3)
P 		83.6
(0.9)
P 		101.9
(3)
P 		52
avr 64.3
(-1.6) 		90.9
(0.8) 		48.5
(-3) 		56.3
(-2.3) 		92.3
(0.9) 		116.2
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189425_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6890
Sequence Type Exemplar sequence
Representative Public ID ZK507.6 NCBI
Target Description ZK507.6 /REP_DB=WormBase Gene ID /WP=CE03820 /TR=SW:P34638 /GB=CAA82372.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=G2-M Cyclin A
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066617 NCBI Caenorhabditis elegans ZK507.6 (ZK507.6) mRNA, complete cds. 11/11 A 
SNAP00000005919 ENSEMBL cdna:SNAP chromosome:CEL140:III:9107160:9109108:-1 11/11 None
GENEFINDER00000005928 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9107160:9111081:-1 11/11 None
ZK507.6 ENSEMBL cdna:known chromosome:CEL140:III:9106607:9109178:-1 gene:ZK507.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9107155-9109104(-) 100.0 100.0
Public Domain and Genome References
Gene Title G2/M Cyclin A
Ensembl ZK507.6
Entrez Gene 176287 Entrez gene
SwissProt P34638 EMBL-EBI
WormBase CE03820 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260505_AT cyclin, putative at
CANINE_2:CFAAFFX.7108.1.S1_AT similar to Cyclin A2 (Cyclin A) cfa
DROSOPHILA_2:1639195_A_AT Cyclin A dm
DROSGENOME1:155068_AT Cyclin A dm
CHICKEN:GGA.4129.1.S1_AT cyclin A2 gga
HG-U95AV2:1943_AT cyclin A2 hs
HC-G110:1943_AT cyclin A2 hs
HG-U133A_2:203418_AT cyclin A2 hs
HG-U133A:203418_AT cyclin A2 hs
HG-U133_PLUS_2:203418_AT cyclin A2 hs
HG-FOCUS:203418_AT cyclin A2 hs
HUGENEFL:X51688_AT cyclin A2 hs
U133_X3P:G4502612_3P_AT cyclin A2 hs
HG-U95AV2:40697_AT cyclin A2 hs
HG-U133_PLUS_2:213226_AT Cyclin A2 hs
HG-U133A_2:213226_AT Cyclin A2 hs
HG-FOCUS:213226_AT Cyclin A2 hs
HG-U133A:213226_AT Cyclin A2 hs
HU35KSUBA:AA424282_AT Cyclin A2 hs
U133_X3P:HS.91728.1.A1_3P_AT Cyclin A2 hs
MU11KSUBB:Z26580_S_AT cyclin A2 mm
MG-U74AV2:99186_AT cyclin A2 mm
MOE430A:1417911_AT cyclin A2 mm
MOUSE430A_2:1417911_AT cyclin A2 mm
MOUSE430_2:1417911_AT cyclin A2 mm
MOE430A:1417910_AT cyclin A2 mm
MOUSE430A_2:1417910_AT cyclin A2 mm
MOUSE430_2:1417910_AT cyclin A2 mm
MU19KSUBA:TC18751_S_AT Cyclin A2 (Ccna2), mRNA mm
MU19KSUBB:TC34515_I_AT Cyclin A2 (Ccna2), mRNA mm
MU19KSUBB:TC34515_S_AT Cyclin A2 (Ccna2), mRNA mm
MU19KSUBC:TC41283_I_AT Cyclin A2 (Ccna2), mRNA mm
MU19KSUBC:TC41283_S_AT Cyclin A2 (Ccna2), mRNA mm
RG-U34B:RC_AA998516_AT cyclin A2 rn
RAE230B:1379582_A_AT cyclin A2 rn
RAT230_2:1379582_A_AT cyclin A2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
74 regulation of progression through cell cycle inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82372 Hypothetical protein ZK507.6 [Caenorhabditis elegans] ref|NP_499018.1| ZK507.6 [Caenorhabditis elegans] sp|P34638|CCNA1_CAEEL G2/mitotic-specific cyclin A1 gb|AAA84393.1| cyclin A 0.0
blast CAE62767 Hypothetical protein CBG06936 [Caenorhabditis briggsae] 1.0E-128
blast CAE62767 Hypothetical protein CBG06936 [Caenorhabditis briggsae] 1.0E-124
blast AAC35953 cyclin A [Dreissena polymorpha] 8.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR004367 EMBL-EBI Cyclin, C-terminal 5.1E-34
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 6.2E-49
Pfam IPR004367 EMBL-EBI Cyclin, C-terminal 5.1E-34
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 6.2E-49
Sequence
Target Sequence 
>C. ELEGANS:189425_S_AT
ttgaagactttgctctcatcactgacaacacctaccgagttcccgacattcttttaatgg
agcgattcttgctcggaaagtttgacttcgttgttgcaatgcccacatcatcttggttcg
gaacatgttttgccaagagaatgaactttacaaaaaagatgcggaatactgttcattatc
tcctcgagttgtcgctgatagatgtccattttctacgttaccgcccatccgatattgcag
ctgcggcttgctgctttgcaaatctccaggctgacgttgaatcctggccacaaaaaatgg
ttgacgacacgggaatcagtacggaagattttgtggacgtgctgagggatcttcacagga
tgtacctgaatgcatcaacggcagatttcaagtcaatattctacaattactcggagactg
cacaaatggaagtggccctgttaccggcacctactgacaagcttcgatcgatgttcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAAGACTTTGCTCTCATCACTGA 193 705 938 Antisense
CCGAGTTCCCGACATTCTTTTAATG 223 223 972 Antisense
GACTTCGTTGTTGCAATGCCCACAT 449 323 1021 Antisense
CAATGCCCACATCATCTTGGTTCGG 413 181 1034 Antisense
GCGGAATACTGTTCATTATCTCCTC 15 295 1098 Antisense
ATTATCTCCTCGAGTTGTCGCTGAT 256 13 1112 Antisense
TGCAGCTGCGGCTTGCTGCTTTGCA 142 577 1173 Antisense
CTGCTTTGCAAATCTCCAGGCTGAC 279 237 1188 Antisense
GTGGACGTGCTGAGGGATCTTCACA 540 489 1270 Antisense
CAAATGGAAGTGGCCCTGTTACCGG 636 191 1360 Antisense
GACAAGCTTCGATCGATGTTCCCAT 315 365 1393 Antisense
Sequence Source Affymetrix Proprietary Database