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[189423_s_at]

Description Y41C4A.4A /REP_DB=WormBase Gene ID /WP=CE24265 /GB=CAB54381.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=bZIP transcription factor
Cluster 4grp_high_8_8 > 04      6grp_total > 56      4grp_total > 05      6grp_cgc > 47      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 399
1 2 3 4 range
A 448.9
(0.2)
P 		244
(-3)
A 		287.8
(-2.3)
P 		632.7
(3)
P 		389
B 410.2
(1.7)
P 		296.4
(-3)
P 		314.1
(-2.3)
P 		440.9
(3)
P 		145
C 276.4
(-2.3)
P 		234.2
(-3)
A 		294.4
(-2)
P 		595.1
(3)
P 		361
avr 378.5
(-0.6) 		258.2
(-3) 		298.8
(-2.2) 		556.2
(3) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 189.1
(2.2)
A 		145.2
(-2.5)
P 		140.4
(-3)
M 		162.6
(-0.6)
P 		162.1
(-0.7)
A 		196.2
(3)
P 		56
B 133.6
(-2.4)
A 		176.5
(-0.3)
P 		188.8
(0.3)
A 		124.7
(-2.8)
A 		121.6
(-3)
A 		244.5
(3)
P 		123
C 104.1
(-3)
P 		172.2
(0.4)
P 		202.5
(1.9)
P 		113.1
(-2.6)
A 		128.6
(-1.8)
A 		224.1
(3)
P 		120
avr 142.3
(-2.4) 		164.6
(-0.9) 		177.2
(-0) 		133.5
(-3) 		137.4
(-2.7) 		221.6
(3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 163.5
(3)
P 		53
(-3)
A 		75.2
(-1.8)
P 		92.6
(-0.8)
P 		111
B 130.8
(3)
P 		73.2
(-3)
P 		72.8
(-3)
P 		94
(-0.8)
P 		58
C 91.5
(1.1)
P 		67.3
(-3)
A 		102.6
(3)
P 		100.3
(2.6)
P 		35
avr 128.6
(3) 		64.5
(-3) 		83.5
(-1.2) 		95.6
(-0.1) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 34.9
(-1.8)
A 		51.6
(3)
P 		30.6
(-3)
M 		41.2
(0)
P 		48.9
(2.2)
A 		47.8
(1.9)
P 		21
B 46.5
(-1.6)
A 		58.8
(-0.3)
P 		45.8
(-1.7)
A 		33
(-3)
A 		49.4
(-1.3)
A 		91.2
(3)
P 		58
C 38.6
(-1.2)
P 		52.6
(0.4)
P 		51.5
(0.3)
P 		22.7
(-3)
A 		41.6
(-0.8)
A 		75
(3)
P 		52
avr 40
(-1.8) 		54.3
(0.4) 		42.6
(-1.4) 		32.3
(-3) 		46.6
(-0.8) 		71.3
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189423_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7257
Sequence Type Exemplar sequence
Representative Public ID Y41C4A.4A NCBI
Target Description Y41C4A.4A /REP_DB=WormBase Gene ID /WP=CE24265 /GB=CAB54381.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=bZIP transcription factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027690(11), NM_001027692(11), NM_001027691(11), NM_001027688(11), NM_001027689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027690 NCBI Caenorhabditis elegans CREB Homolog family member (crh-1) (crh-1) mRNA, complete cds. 11/11 None
NM_001027692 NCBI Caenorhabditis elegans CREB Homolog family member (crh-1) (crh-1) mRNA, complete cds. 11/11 None
NM_001027691 NCBI Caenorhabditis elegans CREB Homolog family member (crh-1) (crh-1) mRNA, complete cds. 11/11 None
NM_001027688 NCBI Caenorhabditis elegans CREB Homolog family member (crh-1) (crh-1) mRNA, complete cds. 11/11 None
NM_001027689 NCBI Caenorhabditis elegans CREB Homolog family member (crh-1) (crh-1) mRNA, complete cds. 11/11 None
GENEFINDER00000034898 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11685087:11693513:1 11/11 None
SNAP00000034881 ENSEMBL cdna:SNAP chromosome:CEL140:III:11689696:11693430:1 9/11 None
Y41C4A.4c ENSEMBL cdna:known chromosome:CEL140:III:11657614:11693653:1 gene:Y41C4A.4 11/11 None
Y41C4A.4e ENSEMBL cdna:known chromosome:CEL140:III:11674538:11693710:1 gene:Y41C4A.4 11/11 None
Y41C4A.4d ENSEMBL cdna:known chromosome:CEL140:III:11675438:11693430:1 gene:Y41C4A.4 11/11 None
Y41C4A.4a ENSEMBL cdna:known chromosome:CEL140:III:11675445:11693713:1 gene:Y41C4A.4 11/11 None
Y41C4A.4b ENSEMBL cdna:known chromosome:CEL140:III:11675538:11693430:1 gene:Y41C4A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034880 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11675533-11693426(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y41C4A.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56255 Hypothetical protein Y41C4A.4d [Caenorhabditis elegans] ref|NP_001022862.1| CREB Homolog family member (crh-1) [Caenorhabditis elegans] 1.0E-108
blast CAB54382 Hypothetical protein Y41C4A.4b [Caenorhabditis elegans] ref|NP_001022860.1| CREB Homolog family member (crh-1) [Caenorhabditis elegans] 1.0E-106
blast CAB54381 Hypothetical protein Y41C4A.4a [Caenorhabditis elegans] ref|NP_001022859.1| CREB Homolog family member (crh-1) [Caenorhabditis elegans] dbj|BAC19843.1| cyclic AMP-response element binding protein 1 gamma 2 [Caenorhabditis elegans] 1.0E-105
blast CAB54381 Hypothetical protein Y41C4A.4a [Caenorhabditis elegans] ref|NP_001022859.1| CREB Homolog family member (crh-1) [Caenorhabditis elegans] dbj|BAC19843.1| cyclic AMP-response element binding protein 1 gamma 2 [Caenorhabditis elegans] 1.0E-103
blast CAB54382 Hypothetical protein Y41C4A.4b [Caenorhabditis elegans] ref|NP_001022860.1| CREB Homolog family member (crh-1) [Caenorhabditis elegans] 1.0E-103
blast CAD56255 Hypothetical protein Y41C4A.4d [Caenorhabditis elegans] ref|NP_001022862.1| CREB Homolog family member (crh-1) [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR003102 EMBL-EBI Coactivator CBP, pKID 4.7E-8
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 1.3E-18
Pfam IPR003102 EMBL-EBI Coactivator CBP, pKID 4.7E-8
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 1.3E-18
Pfam IPR003102 EMBL-EBI Coactivator CBP, pKID 4.7E-8
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 1.3E-18
Pfam IPR003102 EMBL-EBI Coactivator CBP, pKID 4.7E-8
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 1.3E-18
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 1.3E-18
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 1.3E-18
Sequence
Target Sequence 
>C. ELEGANS:189423_S_AT
ccattcgcgccgatcaacggggattttgattttagcgcggcgatcgctgccgcttcacag
cccaaaggtcagttgggatggggattttcggggggaggaccacaacaaaacggactcggc
ggcggcggcggaggtggaggagtaccgggaccttctagtggaattgccggaatgtctgta
caaccaccaactagcagtacaccatcccaacaacaatccgtacaatcacttgaaggcaca
tctgggctcattggaagtgcaatgaagccaatgttgggaattgatgctgtcagctttcca
gaattcggcacaacggactggcagtcaccgatgctctccggcggctacagctcgagccca
tcgccaacaatgacgggcggctcaatgcgaatgggcggtggaccgctgcacggtgaagat
gaatcgaatcgaaagcgacaagtacgattgctaaagaatcgagaggcagcgaaagagtgc
cgcagaaaaaagaaggaatacgtaaaatgtctggaaaatcgcgtttcggtgctggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTCGCGCCGATCAACGGGGATT 331 269 394 Antisense
TGATTTTAGCGCGGCGATCGCTGCC 495 563 420 Antisense
CACAACAAAACGGACTCGGCGGCGG 326 195 494 Antisense
GAGTACCGGGACCTTCTAGTGGAAT 233 387 533 Antisense
TGCCGGAATGTCTGTACAACCACCA 453 585 558 Antisense
CCATCCCAACAACAATCCGTACAAT 236 271 595 Antisense
TGAAGGCACATCTGGGCTCATTGGA 361 575 624 Antisense
TTCGGCACAACGGACTGGCAGTCAC 334 693 697 Antisense
CAATGACGGGCGGCTCAATGCGAAT 283 181 761 Antisense
GCGAATGGGCGGTGGACCGCTGCAC 516 287 780 Antisense
GGAAAATCGCGTTTCGGTGCTGGAA 620 527 906 Antisense
Sequence Source Affymetrix Proprietary Database