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[189420_at]

Description T13C5.1 /REP_DB=WormBase Gene ID /WP=CE27206 /TR=Q27523 /GB=AAK39293.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_high1_10_10 > 62      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_total > 73      4grp_total > 56      6grp_cgc > 75      6grp_high1_sub > 03      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 397
1 2 3 4 range
A 145.8
(-2.7)
P 		203.5
(-1.8)
P 		497.5
(3)
P 		128.9
(-3)
P 		369
B 101.1
(-3)
P 		242.2
(-0.9)
P 		497.9
(3)
P 		144
(-2.4)
P 		397
C 133.5
(-2.5)
P 		214.8
(-1.3)
P 		498.2
(3)
P 		101
(-3)
P 		397
avr 126.8
(-3) 		220.2
(-1.5) 		497.9
(3) 		124.6
(-3) 		373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 158.6
(-3)
M 		217.2
(-1.4)
P 		321.2
(1.3)
P 		384.5
(3)
P 		254
(-0.5)
P 		176.7
(-2.5)
P 		226
B 117.4
(-3)
P 		154.1
(-2)
P 		333
(3)
P 		264.1
(1.1)
P 		240.5
(0.4)
P 		153.3
(-2)
P 		216
C 109.7
(-3)
P 		161.1
(-1.9)
P 		390.4
(3)
P 		359.3
(2.3)
P 		256.2
(0.1)
P 		181.3
(-1.5)
P 		281
avr 128.6
(-3) 		177.5
(-1.7) 		348.2
(3) 		336
(2.7) 		250.2
(0.3) 		170.4
(-1.9) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 53.1
(-1.2)
P 		44.2
(-1.6)
P 		130.1
(3)
P 		18.9
(-3)
P 		111
B 32.2
(-2.9)
P 		59.8
(-0.9)
P 		115.4
(3)
P 		30.7
(-3)
P 		85
C 44.2
(-2)
P 		61.7
(-1.3)
P 		173.6
(3)
P 		17
(-3)
P 		157
avr 43.2
(-1.9) 		55.2
(-1.3) 		139.7
(3) 		22.2
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 29.2
(-3)
M 		77.2
(1.2)
P 		69.9
(0.6)
P 		97.5
(3)
P 		76.6
(1.2)
P 		43
(-1.8)
P 		68
B 40.9
(-3)
P 		51.3
(-1.9)
P 		80.9
(1.2)
P 		70
(0.1)
P 		97.7
(3)
P 		57.2
(-1.3)
P 		57
C 40.7
(-3)
P 		49.2
(-2.1)
P 		99.4
(3)
P 		72.3
(0.2)
P 		82.9
(1.3)
P 		60.7
(-1)
P 		59
avr 36.9
(-3) 		59.2
(-0.3) 		83.4
(2.7) 		79.9
(2.3) 		85.7
(3) 		53.6
(-0.9) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17261
Sequence Type Exemplar sequence
Representative Public ID T13C5.1 NCBI
Target Description T13C5.1 /REP_DB=WormBase Gene ID /WP=CE27206 /TR=Q27523 /GB=AAK39293.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171699(11), NM_001029732(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171699 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-9) (daf-9) mRNA, complete cds. 11/11 None
NM_001029732 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-9) (daf-9) mRNA, complete cds. 11/11 None
GENEFINDER00000030104 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6197801:6200562:1 11/11 None
SNAP00000030095 ENSEMBL cdna:SNAP chromosome:CEL140:X:6198296:6200562:1 11/11 None
T13C5.1a ENSEMBL cdna:known chromosome:CEL140:X:6196885:6200611:1 gene:T13C5.1 11/11 None
T13C5.1b ENSEMBL cdna:known chromosome:CEL140:X:6198052:6200562:1 gene:T13C5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6198051-6200562(+) 100.0 100.0
Public Domain and Genome References
Ensembl T13C5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39293 Abnormal dauer formation protein 9, isoform a [Caenorhabditis elegans] ref|NP_741807.2| abnormal DAuer Formation family member (daf-9) [Caenorhabditis elegans] 0.0
blast AAM15602 Abnormal dauer formation protein 9, isoform b [Caenorhabditis elegans] ref|NP_001024903.1| abnormal DAuer Formation family member (daf-9) [Caenorhabditis elegans] gb|AAL65132.1| DAF-9 isoform A [Caenorhabditis elegans] 0.0
blast T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_HUMAN Animalia; CYP1B1; hum; CP1B_HUMAN; Homo sapiens; Q16678 1.0E-108
p450 CP1B_HUMAN Animalia; CYP1B1; hum; CP1B_HUMAN; Homo sapiens; Q16678 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.7E-92
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.7E-92
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.7E-92
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.7E-92
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741807.2 2 50-72,85-107
NP_001024903.1 2 35-57,70-92
T13C5.1a 2 50-72,85-107
T13C5.1b 2 35-57,70-92
GENEFINDER00000030104 3 7-29,44-66,78-100
SNAP00000030095 2 15-37,49-71
Sequence
Target Sequence 
>C. ELEGANS:189420_AT
ggggaattatatacctgctcaacaatccagaagttcaagcgaaatgccaaatggagattc
tggatgtttttggtaatgacattcccgatatgggcaaaatgaatcagacgccgtatgtga
gagccactctttcggaaatccaacgtttggctaatgttttgccatgggctattccccaca
aaacaatcgaagaatgcaacattggaggatacgatatcccagttaacaccgagattatcc
cagccctcggcgccgttctcttcgatccaaacgtgtttgaatctccaaagcaattcaagc
cagagcgtttccttgacgaagagggcaaatatcgtgttatggaagagtttcgtccgttcg
gtctgggtcccagagtctgtcttggagaaagaatcgctcgcaccgagctctatctcatct
ttgctagtcttctccaaaacttccgtttctacctgaacagaggagatccaatcccagtgg
ccgaacgtgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGAATTATATACCTGCTCAACAA 181 497 1211 Antisense
AGACGCCGTATGTGAGAGCCACTCT 269 71 1316 Antisense
AGAGCCACTCTTTCGGAAATCCAAC 408 69 1330 Antisense
TTTGCCATGGGCTATTCCCCACAAA 506 669 1368 Antisense
GATACGATATCCCAGTTAACACCGA 440 423 1418 Antisense
AGCCAGAGCGTTTCCTTGACGAAGA 178 85 1508 Antisense
TGGGTCCCAGAGTCTGTCTTGGAGA 265 553 1574 Antisense
AAGAATCGCTCGCACCGAGCTCTAT 41 153 1599 Antisense
CTCTATCTCATCTTTGCTAGTCTTC 668 229 1618 Antisense
AACTTCCGTTTCTACCTGAACAGAG 174 137 1648 Antisense
CCAATCCCAGTGGCCGAACGTGTGA 401 275 1678 Antisense
Sequence Source Affymetrix Proprietary Database