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[189419_at] phospholipase A2

Description F15B9.6 /REP_DB=WormBase Gene ID /WP=CE09411 /TR=Q19481 /GB=CAB01424.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=phospholipase A2
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      6grp_highest_nonorm > 62      6grp_total > 71      4grp_total > 29      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 123.3
(3)
M 		112.5
(1.8)
A 		67.9
(-3)
A 		106.8
(1.2)
P 		55
B 111.8
(2.8)
P 		112.3
(3)
A 		94.8
(-3)
A 		108.7
(1.8)
P 		18
C 119.8
(3)
P 		91.5
(-0.2)
A 		66.8
(-3)
A 		108.5
(1.7)
P 		53
avr 118.3
(3) 		105.4
(1.1) 		76.5
(-3) 		108
(1.5) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 733
1 2 3 4 5 6 range
A 201.2
(-3)
P 		210
(-2.9)
P 		488.3
(-0.5)
P 		877.2
(3)
P 		518.2
(-0.2)
P 		281
(-2.3)
P 		676
B 164.1
(-3)
P 		218.2
(-2.4)
P 		477.5
(0.2)
P 		751.1
(3)
P 		526.7
(0.7)
P 		334.2
(-1.3)
P 		587
C 144.4
(-3)
P 		242.5
(-2.2)
P 		484.9
(-0.2)
P 		863.3
(3)
P 		452.6
(-0.4)
P 		304.7
(-1.7)
P 		719
avr 169.9
(-3) 		223.6
(-2.5) 		483.6
(-0.2) 		830.5
(3) 		499.2
(-0) 		306.6
(-1.8) 		661
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 44.9
(3)
M 		24.4
(-1.2)
A 		17.8
(-2.5)
A 		15.6
(-3)
P 		29
B 35.6
(3)
P 		27.7
(-0.5)
A 		22
(-3)
A 		23.2
(-2.5)
P 		14
C 39.7
(3)
P 		26.3
(-0.8)
A 		23.3
(-1.6)
A 		18.3
(-3)
P 		21
avr 40.1
(3) 		26.1
(-1) 		21
(-2.4) 		19
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 37.1
(-3)
P 		74.7
(-1.8)
P 		106.3
(-0.8)
P 		222.5
(3)
P 		156.4
(0.9)
P 		68.4
(-2)
P 		185
B 57.1
(-3)
P 		72.6
(-2.4)
P 		116
(-0.7)
P 		198.9
(2.4)
P 		214
(3)
P 		124.6
(-0.4)
P 		157
C 53.5
(-3)
P 		74
(-2)
P 		123.4
(0.5)
P 		173.6
(3)
P 		146.4
(1.6)
P 		102
(-0.6)
P 		120
avr 49.2
(-3) 		73.8
(-2) 		115.2
(-0.3) 		198.3
(3) 		172.3
(2) 		98.3
(-1) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189419_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12795
Sequence Type Exemplar sequence
Representative Public ID F15B9.6 NCBI
Target Description F15B9.6 /REP_DB=WormBase Gene ID /WP=CE09411 /TR=Q19481 /GB=CAB01424.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=phospholipase A2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073854(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073854 NCBI Caenorhabditis elegans F15B9.6 (F15B9.6) mRNA, complete cds. 11/11 None
SNAP00000032636 ENSEMBL cdna:SNAP chromosome:CEL140:V:13017232:13019063:1 10/11 None
GENEFINDER00000032640 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13016745:13019063:1 11/11 None
F15B9.6 ENSEMBL cdna:known chromosome:CEL140:V:13016735:13019232:1 gene:F15B9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13016759-13019063(+) 100.0 100.0
Public Domain and Genome References
Gene Title phospholipase A2
Ensembl F15B9.6
Entrez Gene 184523 Entrez gene
SwissProt Q19481 EMBL-EBI
WormBase CE09411 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01424 Hypothetical protein F15B9.6 [Caenorhabditis elegans] ref|NP_506255.1| F15B9.6 [Caenorhabditis elegans] 0.0
blast CAB01424 Hypothetical protein F15B9.6 [Caenorhabditis elegans] ref|NP_506255.1| F15B9.6 [Caenorhabditis elegans] 1.0E-102
blast CAE64692 Hypothetical protein CBG09474 [Caenorhabditis briggsae] 4.0E-51
blast CAE64692 Hypothetical protein CBG09474 [Caenorhabditis briggsae] 1.0E-12
blast CAE64693 Hypothetical protein CBG09475 [Caenorhabditis briggsae] 3.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506255.1 1 396-418
F15B9.6 1 396-418
SNAP00000032636 1 265-287
GENEFINDER00000032640 1 401-423
Sequence
Target Sequence 
>C. ELEGANS:189419_AT
gagtcctgcaaagccttttctgagaaacttctgaaaaaccgggtagatgaggaaatatat
aaaactatcgggacaaaggaggtcgaaacccaatttgtgacgttcgacgggaatcttcac
gcagcgatgaaaccaatgggtactctgaattcaatcctctctgctactgttcacaagatt
caacctcacccagtgatcaatgctactcttcggcaccttttcgataatgatgtgtacaaa
tatggatggtccaatagaattgaaatcgattcttgtatactccgtttcgaacattgcaaa
acactggataaaatagattattgtttgatacaacttcgaggctgcattttgagcattgat
aacgaagatgcggatttcaaatcaacgaccaaaacaatttatgccactatcgatgagttg
atcaagattccagaagaatcttggtggagcacgattttgcctgtaattgccatcatcatt
tcaatattcgtttgtttctgtgatatcttccgttgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCCTGCAAAGCCTTTTCTGAGA 571 399 757 Antisense
GAAACCCAATTTGTGACGTTCGACG 330 357 841 Antisense
TCGACGGGAATCTTCACGCAGCGAT 61 603 860 Antisense
GGGTACTCTGAATTCAATCCTCTCT 485 497 894 Antisense
TCCTCTCTGCTACTGTTCACAAGAT 491 593 911 Antisense
TCACAAGATTCAACCTCACCCAGTG 153 629 927 Antisense
AGTGATCAATGCTACTCTTCGGCAC 665 59 948 Antisense
AATCGATTCTTGTATACTCCGTTTC 394 169 1020 Antisense
TGATACAACTTCGAGGCTGCATTTT 177 565 1082 Antisense
TTTTGCCTGTAATTGCCATCATCAT 553 677 1211 Antisense
GTTTCTGTGATATCTTCCGTTGTGT 337 451 1250 Antisense
Sequence Source Affymetrix Proprietary Database