[Home] | [Total List]

[189417_s_at] neurexin III like /// neurexin I like

Description F20B10.2 /REP_DB=WormBase Gene ID /WP=CE05671 /TR=Q19619 /GB=CAA93464.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=neurexin I like
Cluster 6grp_high1_10_10 > 34      4grp_high_8_8 > 09      6grp_total > 01      4grp_total > 22      6grp_cgc > 53      6grp_high1_sub > 02      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 272.9
(3)
P 		105
(-2.2)
M 		80.8
(-3)
M 		195.2
(0.6)
P 		192
B 244.8
(3)
P 		69.8
(-3)
P 		83.6
(-2.5)
A 		155.6
(-0.1)
P 		175
C 311.7
(1.5)
P 		156.3
(-1.8)
P 		102
(-3)
P 		381.2
(3)
P 		279
avr 276.5
(3) 		110.4
(-2.3) 		88.8
(-3) 		244
(2) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 95.8
(-2.7)
A 		304.9
(3)
P 		132
(-1.7)
P 		169.8
(-0.7)
P 		83
(-3)
P 		131
(-1.7)
A 		222
B 92.4
(-1.8)
P 		137.3
(3)
P 		85.4
(-2.6)
P 		81.4
(-3)
M 		94.8
(-1.6)
P 		105.2
(-0.4)
P 		56
C 196.1
(3)
P 		186.6
(2.5)
P 		170.6
(1.7)
P 		82.3
(-3)
P 		96.1
(-2.3)
P 		102.7
(-1.9)
P 		114
avr 128.1
(-1.1) 		209.6
(3) 		129.3
(-1.1) 		111.2
(-2) 		91.3
(-3) 		113
(-1.9) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 99.4
(3)
P 		22.8
(-2.9)
M 		21.1
(-3)
M 		28.6
(-2.4)
P 		78
B 78.1
(3)
P 		17.2
(-3)
P 		19.4
(-2.8)
A 		33.2
(-1.4)
P 		61
C 103.2
(3)
P 		44.9
(-2.2)
P 		35.5
(-3)
P 		64.3
(-0.4)
P 		68
avr 93.6
(3) 		28.3
(-2.7) 		25.3
(-3) 		42
(-1.5) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 17.7
(-3)
A 		108.4
(3)
P 		28.7
(-2.3)
P 		43.1
(-1.3)
P 		25
(-2.5)
P 		31.9
(-2.1)
A 		91
B 32.2
(-0.2)
P 		45.7
(3)
P 		20.7
(-3)
P 		21.6
(-2.8)
M 		38.5
(1.3)
P 		39.2
(1.4)
P 		25
C 72.7
(3)
P 		56.9
(1.3)
P 		43.4
(-0.1)
P 		16.5
(-3)
P 		31.1
(-1.4)
P 		34.4
(-1.1)
P 		56
avr 40.9
(-1.1) 		70.3
(3) 		30.9
(-2.5) 		27.1
(-3) 		31.5
(-2.4) 		35.2
(-1.9) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189417_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9098
Sequence Type Exemplar sequence
Representative Public ID F20B10.2 NCBI
Target Description F20B10.2 /REP_DB=WormBase Gene ID /WP=CE05671 /TR=Q19619 /GB=CAA93464.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=neurexin I like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069911(11), NM_069912(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069911 NCBI Caenorhabditis elegans Neurexin Like receptor family member (nlr-1) (nlr-1) mRNA, complete cds. 11/11 A 
NM_069912 NCBI Caenorhabditis elegans F20B10.2 (F20B10.2) mRNA, complete cds. 11/11 None
SNAP00000024400 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12170944:12176703:-1 11/11 None
SNAP00000024401 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12183582:12184935:-1 11/11 None
GENEFINDER00000024402 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12182538:12186923:-1 11/11 None
GENEFINDER00000024403 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12170944:12180420:-1 11/11 None
F20B10.1 ENSEMBL cdna:known chromosome:CEL140:IV:12170805:12178306:-1 gene:F20B10.1 11/11 A 
F20B10.2 ENSEMBL cdna:known chromosome:CEL140:IV:12183074:12186538:-1 gene:F20B10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12182543-12186544(-) 100.0 100.0
chrIV:12175374-12178312(-) 90.77 90.77
Public Domain and Genome References
Gene Title neurexin III like
neurexin I like
Gene Symbol nlr-1
Ensembl F20B10.1
F20B10.2
Entrez Gene 178167 Entrez gene
3564951 Entrez gene
SwissProt Q19617 EMBL-EBI
Q19619 EMBL-EBI
WormBase CE17688 Wormbase
CE35498 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639459_A_AT Neurexin IV dm
DROSGENOME1:142283_AT Neurexin IV dm
DROSOPHILA_2:1639459_A_AT Neurexin IV dm
DROSGENOME1:142283_AT Neurexin IV dm
CHICKEN:GGAAFFX.7843.1.S1_AT similar to Contactin associated protein-like 2 precursor (Cell recognition molecule Caspr2) gga
CHICKEN:GGAAFFX.7843.3.S1_S_AT similar to Contactin associated protein-like 2 precursor (Cell recognition molecule Caspr2) gga
CHICKEN:GGAAFFX.7843.1.S1_AT similar to Contactin associated protein-like 2 precursor (Cell recognition molecule Caspr2) gga
CHICKEN:GGAAFFX.7843.3.S1_S_AT similar to Contactin associated protein-like 2 precursor (Cell recognition molecule Caspr2) gga
HG-U95AV2:37155_AT contactin associated protein-like 2 hs
HG-U133A:219302_S_AT contactin associated protein-like 2 hs
HG-U133_PLUS_2:219302_S_AT contactin associated protein-like 2 hs
HG-U133A_2:219302_S_AT contactin associated protein-like 2 hs
HU35KSUBA:RC_AA167696_AT contactin associated protein-like 2 hs
HU35KSUBB:RC_R51354_AT contactin associated protein-like 2 hs
HU35KSUBC:RC_AA114191_S_AT contactin associated protein-like 2 hs
HU35KSUBD:RC_Z38654_AT contactin associated protein-like 2 hs
HU35KSUBD:RC_R53072_AT contactin associated protein-like 2 hs
U133_X3P:G7662349_3P_S_AT contactin associated protein-like 2 hs
U133_X3P:HS.106552.1.S1_3P_S_AT contactin associated protein-like 2 hs
U133_X3P:HS.106552.0.S3_3P_S_AT contactin associated protein-like 2 hs
HG-U133A_2:215145_S_AT contactin associated protein-like 2 hs
HG-U133_PLUS_2:215145_S_AT contactin associated protein-like 2 hs
HG-U133A:215145_S_AT contactin associated protein-like 2 hs
HG-U133A_2:219300_S_AT contactin associated protein-like 2 hs
HG-U133_PLUS_2:219300_S_AT contactin associated protein-like 2 hs
HG-U133A:219300_S_AT contactin associated protein-like 2 hs
HG-U133A_2:219301_S_AT contactin associated protein-like 2 hs
HG-U133_PLUS_2:219301_S_AT contactin associated protein-like 2 hs
HG-U133A:219301_S_AT contactin associated protein-like 2 hs
HG-U95B:47466_I_AT contactin associated protein-like 2 hs
HG-U95B:47467_R_AT contactin associated protein-like 2 hs
HG-U95C:60803_AT contactin associated protein-like 2 hs
HG-U95E:90959_AT contactin associated protein-like 2 hs
U133_X3P:HS2.434352.1.S1_3P_AT Contactin associated protein-like 2 hs
U133_X3P:HS2.382218.1.S1_3P_AT Contactin associated protein-like 2 hs
U133_X3P:HS.162006.0.S1_3P_AT Contactin associated protein-like 2 hs
HG-U133_PLUS_2:1563110_AT Contactin associated protein-like 2 hs
HG-U133_PLUS_2:1569780_AT Contactin associated protein-like 2 hs
HG-U133_PLUS_2:233944_AT Contactin associated protein-like 2 hs
HG-U133B:233944_AT Contactin associated protein-like 2 hs
HG-U95D:87793_AT Contactin associated protein-like 2 hs
HU35KSUBD:RC_AA342988_AT Contactin associated protein-like 2 hs
HG-U95AV2:37155_AT contactin associated protein-like 2 hs
HG-U133A:219302_S_AT contactin associated protein-like 2 hs
HG-U133_PLUS_2:219302_S_AT contactin associated protein-like 2 hs
HG-U133A_2:219302_S_AT contactin associated protein-like 2 hs
HU35KSUBA:RC_AA167696_AT contactin associated protein-like 2 hs
HU35KSUBB:RC_R51354_AT contactin associated protein-like 2 hs
HU35KSUBC:RC_AA114191_S_AT contactin associated protein-like 2 hs
HU35KSUBD:RC_Z38654_AT contactin associated protein-like 2 hs
HU35KSUBD:RC_R53072_AT contactin associated protein-like 2 hs
U133_X3P:G7662349_3P_S_AT contactin associated protein-like 2 hs
U133_X3P:HS.106552.1.S1_3P_S_AT contactin associated protein-like 2 hs
U133_X3P:HS.106552.0.S3_3P_S_AT contactin associated protein-like 2 hs
HG-U133A_2:215145_S_AT contactin associated protein-like 2 hs
HG-U133_PLUS_2:215145_S_AT contactin associated protein-like 2 hs
HG-U133A:215145_S_AT contactin associated protein-like 2 hs
HG-U133A_2:219300_S_AT contactin associated protein-like 2 hs
HG-U133_PLUS_2:219300_S_AT contactin associated protein-like 2 hs
HG-U133A:219300_S_AT contactin associated protein-like 2 hs
HG-U133A_2:219301_S_AT contactin associated protein-like 2 hs
HG-U133_PLUS_2:219301_S_AT contactin associated protein-like 2 hs
HG-U133A:219301_S_AT contactin associated protein-like 2 hs
HG-U95B:47466_I_AT contactin associated protein-like 2 hs
HG-U95B:47467_R_AT contactin associated protein-like 2 hs
HG-U95C:60803_AT contactin associated protein-like 2 hs
HG-U95E:90959_AT contactin associated protein-like 2 hs
U133_X3P:HS2.434352.1.S1_3P_AT Contactin associated protein-like 2 hs
U133_X3P:HS2.382218.1.S1_3P_AT Contactin associated protein-like 2 hs
U133_X3P:HS.162006.0.S1_3P_AT Contactin associated protein-like 2 hs
HG-U133_PLUS_2:1563110_AT Contactin associated protein-like 2 hs
HG-U133_PLUS_2:1569780_AT Contactin associated protein-like 2 hs
HG-U133_PLUS_2:233944_AT Contactin associated protein-like 2 hs
HG-U133B:233944_AT Contactin associated protein-like 2 hs
HG-U95D:87793_AT Contactin associated protein-like 2 hs
HU35KSUBD:RC_AA342988_AT Contactin associated protein-like 2 hs
MG-U74BV2:107391_AT contactin associated protein-like 2 mm
MG-U74CV2:169233_AT contactin associated protein-like 2 mm
MOE430A:1422798_AT contactin associated protein-like 2 mm
MOUSE430A_2:1422798_AT contactin associated protein-like 2 mm
MOUSE430_2:1422798_AT contactin associated protein-like 2 mm
MOE430A:1450758_AT contactin associated protein-like 2 mm
MOUSE430A_2:1450758_AT contactin associated protein-like 2 mm
MOUSE430_2:1450758_AT contactin associated protein-like 2 mm
MOE430A:1437782_AT contactin associated protein-like 2 mm
MOUSE430A_2:1437782_AT contactin associated protein-like 2 mm
MOUSE430_2:1437782_AT contactin associated protein-like 2 mm
MOUSE430_2:1446436_AT Contactin associated protein-like 2, transcript variant 2, mRNA (cDNA clone IMAGE:4456740) mm
MOE430B:1446436_AT Contactin associated protein-like 2, transcript variant 2, mRNA (cDNA clone IMAGE:4456740) mm
MU19KSUBC:TC36762_AT Contactin associated protein-like 2, transcript variant 2, mRNA (cDNA clone IMAGE:4456740) mm
MG-U74BV2:107391_AT contactin associated protein-like 2 mm
MG-U74CV2:169233_AT contactin associated protein-like 2 mm
MOE430A:1422798_AT contactin associated protein-like 2 mm
MOUSE430A_2:1422798_AT contactin associated protein-like 2 mm
MOUSE430_2:1422798_AT contactin associated protein-like 2 mm
MOE430A:1450758_AT contactin associated protein-like 2 mm
MOUSE430A_2:1450758_AT contactin associated protein-like 2 mm
MOUSE430_2:1450758_AT contactin associated protein-like 2 mm
MOE430A:1437782_AT contactin associated protein-like 2 mm
MOUSE430A_2:1437782_AT contactin associated protein-like 2 mm
MOUSE430_2:1437782_AT contactin associated protein-like 2 mm
MOUSE430_2:1446436_AT Contactin associated protein-like 2, transcript variant 2, mRNA (cDNA clone IMAGE:4456740) mm
MOE430B:1446436_AT Contactin associated protein-like 2, transcript variant 2, mRNA (cDNA clone IMAGE:4456740) mm
MU19KSUBC:TC36762_AT Contactin associated protein-like 2, transcript variant 2, mRNA (cDNA clone IMAGE:4456740) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7155 cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93465 Hypothetical protein F20B10.1 [Caenorhabditis elegans] ref|NP_502312.1| Neurexin Like receptor family member (nlr-1) [Caenorhabditis elegans] 0.0
blast CAE62196 Hypothetical protein CBG06244 [Caenorhabditis briggsae] 0.0
blast CAA93464 Hypothetical protein F20B10.2 [Caenorhabditis elegans] ref|NP_502313.2| F20B10.2 [Caenorhabditis elegans] 1.0E-154
Protein Domains
Database ID Description E-Value
Pfam IPR001791 EMBL-EBI Laminin G 8.0E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 6.8E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-5
Pfam IPR001791 EMBL-EBI Laminin G 4.3E-5
Pfam IPR001791 EMBL-EBI Laminin G 8.0E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 6.8E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-5
Pfam IPR001791 EMBL-EBI Laminin G 4.3E-5
Pfam IPR001791 EMBL-EBI Laminin G 4.3E-5
Pfam IPR001791 EMBL-EBI Laminin G 8.0E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 6.8E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502312.1 1 1122-1144
F20B10.1 1 1122-1144
SNAP00000024400 1 1039-1061
GENEFINDER00000024403 1 1208-1230
Sequence
Target Sequence 
>C. ELEGANS:189417_S_AT
atttccggcgtttgaacaagcgacagaagatgtcaggggacctttgttgattctcacgat
atgtgattatggtaggtcaacagagaaagtgggagttgttaaaagtataaacactccgat
cacggcatttgatgactcttcatacaccgtagaagctcatcacgcaggccttgtctcaat
gtatgagaatgatctttgcgttgtctttcgaacctatagatcaggagtattcttcttctc
aatggctgatcaaggagatgtactaattgcacagatcatccatggaactgttcatgttat
atttgattttggatctcttacaccatctagaataagtgctggtaaagcattggatgatgg
aaggtggcatgagatgagatggcttcatcaattcgactctgtgcaactgtcaattgacgg
tgtcctccttaaccagacggctccaacgggtctttatcgaaaattggacttgcatagtgt
ggtacatattggaggacgaccaaatgatgacttctcgcaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCCGGCGTTTGAACAAGCGACA 332 13 306 Antisense
GTCAGGGGACCTTTGTTGATTCTCA 330 465 337 Antisense
ACACTCCGATCACGGCATTTGATGA 219 109 416 Antisense
CACCGTAGAAGCTCATCACGCAGGC 139 201 450 Antisense
CGCAGGCCTTGTCTCAATGTATGAG 624 253 468 Antisense
TGATCTTTGCGTTGTCTTTCGAACC 281 565 495 Antisense
AGATCAGGAGTATTCTTCTTCTCAA 466 65 523 Antisense
TTTGGATCTCTTACACCATCTAGAA 55 667 613 Antisense
GCTTCATCAATTCGACTCTGTGCAA 681 305 687 Antisense
GTCAATTGACGGTGTCCTCCTTAAC 597 459 714 Antisense
GACCAAATGATGACTTCTCGCAAGG 534 383 803 Antisense
Sequence Source Affymetrix Proprietary Database