[Home] | [Total List]

[189414_at] Band 4.1 family

Description H05G16.1 /REP_DB=WormBase Gene ID /WP=CE11568 /TR=O17905 /GB=CAB10024.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Band 4.1 family
Cluster 6grp_total > 25      4grp_total > 62      6grp_cgc > 32      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 203.5
(3)
A 		110.2
(-1.9)
A 		117.3
(-1.5)
A 		88.3
(-3)
A 		115
B 111.5
(3)
P 		44.8
(-3)
A 		108.1
(2.7)
A 		94.2
(1.4)
A 		67
C 156.7
(3)
A 		135.2
(1.8)
A 		124.6
(1.2)
A 		49.9
(-3)
A 		107
avr 157.2
(3) 		96.7
(-1.6) 		116.7
(-0) 		77.5
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 121.8
(1.3)
A 		163.1
(3)
A 		84.7
(-0.1)
A 		13.6
(-3)
A 		93.6
(0.2)
A 		67.6
(-0.8)
A 		150
B 197.5
(3)
P 		162
(1.3)
P 		102
(-1.7)
A 		85.4
(-2.5)
A 		77.6
(-2.9)
A 		75
(-3)
A 		123
C 169.5
(2)
P 		190.6
(3)
A 		79.2
(-2.3)
A 		74.3
(-2.6)
A 		83.1
(-2.1)
A 		64.9
(-3)
A 		126
avr 162.9
(2.5) 		171.9
(3) 		88.6
(-1.4) 		57.8
(-3) 		84.8
(-1.6) 		69.2
(-2.4) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 74.1
(3)
A 		23.9
(-1.9)
A 		30.7
(-1.3)
A 		12.9
(-3)
A 		61
B 35.5
(3)
P 		11.1
(-3)
A 		25
(0.4)
A 		20.1
(-0.8)
A 		24
C 51.9
(3)
A 		38.9
(1.2)
A 		43.4
(1.8)
A 		8.4
(-3)
A 		44
avr 53.8
(3) 		24.6
(-1.4) 		33
(-0.1) 		13.8
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 22.5
(-0.9)
A 		58
(3)
A 		18.5
(-1.3)
A 		3.5
(-3)
A 		28.2
(-0.3)
A 		16.5
(-1.6)
A 		55
B 68.7
(3)
P 		53.9
(1.1)
P 		24.8
(-2.7)
A 		22.6
(-3)
A 		31.5
(-1.8)
A 		28
(-2.3)
A 		46
C 62.8
(3)
P 		58.2
(2.4)
A 		20.2
(-2.3)
A 		14.9
(-3)
A 		26.9
(-1.5)
A 		21.7
(-2.1)
A 		48
avr 51.3
(2.2) 		56.7
(3) 		21.2
(-2) 		13.7
(-3) 		28.9
(-0.9) 		22.1
(-1.8) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189414_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16070
Sequence Type Exemplar sequence
Representative Public ID H05G16.1 NCBI
Target Description H05G16.1 /REP_DB=WormBase Gene ID /WP=CE11568 /TR=O17905 /GB=CAB10024.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Band 4.1 family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077533(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077533 NCBI Caenorhabditis elegans FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-3) (frm-3) mRNA, complete cds. 11/11 None
SNAP00000033028 ENSEMBL cdna:SNAP chromosome:CEL140:X:11577578:11580757:1 11/11 None
H05G16.1 ENSEMBL cdna:known chromosome:CEL140:X:11576176:11581647:1 gene:H05G16.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11576175-11580757(+) 100.0 100.0
Public Domain and Genome References
Gene Title Band 4.1 family
Gene Symbol frm-3
Ensembl H05G16.1
Entrez Gene 181346 Entrez gene
SwissProt O17905 EMBL-EBI
WormBase CE11568 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
5856 cytoskeleton inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
8092 cytoskeletal protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB10024 Hypothetical protein H05G16.1 [Caenorhabditis elegans] ref|NP_509934.1| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-3) [Caenorhabditis elegans] 0.0
blast CAE70613 Hypothetical protein CBG17296 [Caenorhabditis briggsae] 0.0
blast AAP37793 At5g61270 [Arabidopsis thaliana] gb|AAO00851.1| Unknown protein [Arabidopsis thaliana] 1.0E-177
blast AAP37793 At5g61270 [Arabidopsis thaliana] gb|AAO00851.1| Unknown protein [Arabidopsis thaliana] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR000299 EMBL-EBI Band 4.1 2.3E-53
Pfam IPR000299 EMBL-EBI Band 4.1 3.2E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509934.1 1 36-58
H05G16.1 1 36-58
Sequence
Target Sequence 
>C. ELEGANS:189414_AT
caagatcacactatttctccaaccacgccggacagtgatgttctggagtatctgctaaga
agaagaagtttacttggagataagtcagttatcaaaacgaaatcaaaaagaacggatccg
cgccgccaaactcagcctgttcggtttgatctaccaccgtctccttgttcgccaacagct
ggtggttctactccattcatttcaattcttaacgatgatctcttcgatgagtgcgtgtcc
gaatccagaagtctccatgaagacatggaccgtttggacaaaactactccacacaatcaa
tcaatatcttcatttatgtctcaaaagtcacggcgcgattcggaagacagtgatgtaatg
ccacctcctcctgaagaaatattgaacaaggccatgatttcatcgtctcgtccagcccct
ccacctccaccaccaaaatctttggcggctgccgtcaaagttgccgaaatgaaagctgct
gctgccggaaagatctactacagtggaagctcgagaactggcaagattaccgattcacct
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGATCACACTATTTCTCCAACCA 211 185 2719 Antisense
CCAACCACGCCGGACAGTGATGTTC 351 277 2737 Antisense
AACTCAGCCTGTTCGGTTTGATCTA 390 141 2847 Antisense
GTTCGCCAACAGCTGGTGGTTCTAC 584 437 2885 Antisense
GTTCTACTCCATTCATTTCAATTCT 609 443 2903 Antisense
GATCTCTTCGATGAGTGCGTGTCCG 697 417 2935 Antisense
AAACTACTCCACACAATCAATCAAT 517 127 2999 Antisense
GCCACCTCCTCCTGAAGAAATATTG 34 279 3078 Antisense
CAAGGCCATGATTTCATCGTCTCGT 600 183 3105 Antisense
TGCTGCTGCCGGAAAGATCTACTAC 142 581 3195 Antisense
ACTGGCAAGATTACCGATTCACCTC 412 97 3235 Antisense
Sequence Source Affymetrix Proprietary Database