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[189413_at] cytochrome P450

Description E03E2.1 /REP_DB=WormBase Gene ID /WP=CE09127 /TR=O17329 /GB=AAB71246.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 27      4grp_high_8_8 > 63      6grp_highest_nonorm > 62      6grp_total > 62      4grp_total > 56      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 03      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 432.8
(1.7)
P 		277.4
(-1.8)
P 		488.5
(3)
P 		224.6
(-3)
P 		264
B 291.3
(-2.2)
P 		343.7
(-0.9)
P 		500.6
(3)
P 		256.8
(-3)
P 		244
C 264.1
(-2.3)
P 		274
(-2.1)
P 		492.6
(3)
P 		234.2
(-3)
P 		258
avr 329.4
(-0.9) 		298.4
(-1.6) 		493.9
(3) 		238.5
(-3) 		255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 496
1 2 3 4 5 6 range
A 303.3
(-3)
P 		495.3
(0.7)
P 		560.4
(2)
P 		613.1
(3)
P 		420.2
(-0.7)
P 		368.2
(-1.7)
P 		310
B 389.2
(-3)
P 		497
(-1.4)
P 		799.6
(3)
P 		590.9
(-0.1)
P 		645.8
(0.8)
P 		391.4
(-3)
P 		410
C 318.3
(-3)
P 		421
(-1.5)
P 		717.9
(3)
P 		654.2
(2)
P 		426
(-1.4)
P 		458
(-0.9)
P 		400
avr 336.9
(-3) 		471.1
(-0.7) 		692.6
(3) 		619.4
(1.8) 		497.3
(-0.3) 		405.9
(-1.8) 		356
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 157.6
(3)
P 		60.2
(-1.7)
P 		127.7
(1.6)
P 		32.9
(-3)
P 		125
B 92.9
(0.7)
P 		84.9
(-0)
P 		116
(3)
P 		54.7
(-3)
P 		61
C 87.4
(-0.8)
P 		78.8
(-1.2)
P 		171.7
(3)
P 		39.5
(-3)
P 		132
avr 112.6
(1.4) 		74.6
(-1) 		138.5
(3) 		42.4
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 55.9
(-3)
P 		176.2
(3)
P 		122
(0.3)
P 		155.5
(2)
P 		126.8
(0.5)
P 		89.6
(-1.3)
P 		120
B 135.4
(-3)
P 		165.4
(-1.6)
P 		194.2
(-0.2)
P 		156.5
(-2)
P 		262.4
(3)
P 		146
(-2.5)
P 		127
C 118
(-3)
P 		128.5
(-2)
P 		182.7
(3)
P 		131.6
(-1.7)
P 		137.9
(-1.2)
P 		153.3
(0.3)
P 		65
avr 103.1
(-3) 		156.7
(1.4) 		166.3
(2.2) 		147.9
(0.7) 		175.7
(3) 		129.6
(-0.8) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16726
Sequence Type Exemplar sequence
Representative Public ID E03E2.1 NCBI
Target Description E03E2.1 /REP_DB=WormBase Gene ID /WP=CE09127 /TR=O17329 /GB=AAB71246.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076560 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-43A1) (cyp-43A1) mRNA, complete cds. 11/11 None
GENEFINDER00000003889 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5713603:5717465:1 11/11 None
E03E2.1.3 ENSEMBL cdna:known chromosome:CEL140:X:5714237:5717473:1 gene:E03E2.1 11/11 None
E03E2.1.2 ENSEMBL cdna:known chromosome:CEL140:X:5714480:5717526:1 gene:E03E2.1 11/11 None
E03E2.1.1 ENSEMBL cdna:known chromosome:CEL140:X:5714480:5717801:1 gene:E03E2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003885 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5714759-5717465(+) 99.59 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-43A1
Ensembl E03E2.1
Entrez Gene 180838 Entrez gene
SwissProt O17329 EMBL-EBI
WormBase CE29747 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71246 Hypothetical protein E03E2.1 [Caenorhabditis elegans] ref|NP_508961.2| CYtochrome P450 family member (cyp-43A1) [Caenorhabditis elegans] 0.0
blast CAE68790 Hypothetical protein CBG14735 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
p450 CP11_MOUSE Animalia; CYP1A-1; mou; CP11_MOUSE; Mus musculus; P00184 5.0E-87
p450 pir:B37222 Animalia; CYP1A2; dog; pir:B37222; Canis familiaris; B37222 3.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.4E-43
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.4E-43
Sequence
Target Sequence 
>C. ELEGANS:189413_AT
cagtgcaagtttatctctgtggccgggtttgacactacatccaatacgctgactttgctt
ttcaactttcttgctaataatccggatgttcaggacaaaatctacgaggctgaaataaag
aatcaaccggaacaaatcagctttgaaactgtatcttctcttcgactactccaaaattgt
atttttgaaacattgcgactttttccacatgcttcaccgctacaaactcgaatttgcacg
gagccatttaaaatcggaaaatatcagtttttggaaaacgtacaaatcgttgttaacccc
tggggccctcatcacgatcgagaaatttggggaaacgatgttgattgttttcggccatct
agattcgaaaatctaaccgaacaacaaagaaaggcattcatgccgtttggtgtcgggcca
agacaatgcgttggaatgcggtttgcactgctggaaatgaaaacaactgcttttcgaatg
ctgcaaaaatattccgtctttacaaactcaccggttcacgacagacacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTGCAAGTTTATCTCTGTGGCCG 622 207 862 Antisense
TCTGTGGCCGGGTTTGACACTACAT 453 597 877 Antisense
GACACTACATCCAATACGCTGACTT 437 367 892 Antisense
GACTTTGCTTTTCAACTTTCTTGCT 206 373 912 Antisense
ACATTGCGACTTTTTCCACATGCTT 449 105 1051 Antisense
GCTTCACCGCTACAAACTCGAATTT 361 303 1072 Antisense
AACTCGAATTTGCACGGAGCCATTT 62 141 1086 Antisense
GATTGTTTTCGGCCATCTAGATTCG 298 435 1204 Antisense
GCATTCATGCCGTTTGGTGTCGGGC 634 307 1255 Antisense
AACAACTGCTTTTCGAATGCTGCAA 429 135 1323 Antisense
ACTCACCGGTTCACGACAGACACGG 91 99 1367 Antisense
Sequence Source Affymetrix Proprietary Database