[Home] | [Total List]

[189410_s_at] carboxyesterase

Description T22D1.11 /REP_DB=WormBase Gene ID /WP=CE17255 /TR=Q9GZG9 /GB=AAF98632.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=carboxyesterase
Cluster 6grp_total > 54      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 25.2
(-2.5)
A 		94.7
(0.5)
A 		153.9
(3)
A 		13.2
(-3)
A 		141
B 22.8
(-1.8)
A 		95.2
(3)
A 		81.2
(2.1)
A 		4.1
(-3)
A 		91
C 21.2
(-2.5)
A 		128
(3)
A 		122.3
(2.7)
M 		12.4
(-3)
A 		116
avr 23.1
(-2.3) 		106
(2.3) 		119.1
(3) 		9.9
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 26.5
(-2.8)
A 		26.3
(-2.8)
A 		53.8
(0.8)
A 		24.6
(-3)
A 		70.3
(3)
A 		45.6
(-0.2)
A 		46
B 39.3
(-0.9)
A 		36
(-1.3)
A 		67.6
(3)
A 		23.5
(-3)
A 		54.5
(1.2)
A 		63.6
(2.5)
P 		44
C 2.8
(-3)
A 		70.1
(2.5)
P 		68.1
(2.3)
A 		40.7
(0.1)
A 		23.7
(-1.3)
A 		76.5
(3)
P 		74
avr 22.9
(-3) 		44.1
(0.2) 		63.2
(3) 		29.6
(-2) 		49.5
(1) 		61.9
(2.8) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 9.2
(-1.9)
A 		20.6
(-0.1)
A 		40.2
(3)
A 		1.9
(-3)
A 		38
B 7.3
(-1.3)
A 		23.5
(3)
A 		18.8
(1.8)
A 		0.9
(-3)
A 		23
C 7
(-2.3)
A 		36.8
(2.1)
A 		42.6
(3)
M 		2.1
(-3)
A 		41
avr 7.8
(-1.8) 		27
(1.7) 		33.9
(3) 		1.6
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.9
(-3)
A 		9.4
(-1.3)
A 		11.7
(-0.5)
A 		6.2
(-2.5)
A 		21.2
(3)
A 		11.1
(-0.7)
A 		16
B 13.7
(-0.4)
A 		12
(-1)
A 		16.4
(0.5)
A 		6.2
(-3)
A 		22.1
(2.5)
A 		23.7
(3)
P 		18
C 1
(-3)
A 		21.4
(2)
P 		17.3
(1)
A 		8.2
(-1.2)
A 		7.7
(-1.4)
A 		25.6
(3)
P 		25
avr 6.5
(-3) 		14.3
(0.4) 		15.1
(0.8) 		6.9
(-2.8) 		17
(1.6) 		20.1
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189410_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9270
Sequence Type Exemplar sequence
Representative Public ID T22D1.11 NCBI
Target Description T22D1.11 /REP_DB=WormBase Gene ID /WP=CE17255 /TR=Q9GZG9 /GB=AAF98632.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=carboxyesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068669(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068669 NCBI Caenorhabditis elegans T22D1.11 (carboxyesterase) mRNA, complete cds. 11/11 None
SNAP00000024017 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6926150:6928389:-1 11/11 None
GENEFINDER00000024022 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6925819:6928404:-1 11/11 None
T22D1.11 ENSEMBL cdna:known chromosome:CEL140:IV:6926150:6928404:-1 gene:T22D1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6926155-6928410(-) 99.49 100.0
Public Domain and Genome References
Gene Title carboxyesterase
Ensembl T22D1.11
Entrez Gene 177459 Entrez gene
SwissProt Q9GZG9 EMBL-EBI
WormBase CE17255 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF98632 Hypothetical protein T22D1.11 [Caenorhabditis elegans] ref|NP_501070.1| T22D1.11 [Caenorhabditis elegans] 0.0
blast CAE61777 Hypothetical protein CBG05737 [Caenorhabditis briggsae] 0.0
blast CAE61475 Hypothetical protein CBG05369 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.5E-49
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.5E-56
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501070.1 1 536-558
T22D1.11 1 536-558
SNAP00000024017 1 499-521
GENEFINDER00000024022 1 540-562
Sequence
Target Sequence 
>C. ELEGANS:189410_S_AT
ggaattcttgcccaaaccaaactgaaagtcgataaacagttagataaaggaattccgaca
tatttctatgaatattcatatccaaaacatccttctcatactgatgatctttcctatata
atgggcgttcatgcatttgaaaaagatgaaaatgagatacatcttgccaaatcgtaccaa
gaaatgttcatgaactttgtgaaatttggagagccaggcggtggatttgaaatgtcgact
tttgaaaattcaagttatttcaatttttactggaatgaaacgaccggagaaaagtcttca
atgaaaactaatttcgagaaagagatcatcaaatactggttgaaagacatgttcgaatat
gatcaaaatattacagctgcaaaacaactaaaagtagccataacccggtcagctaaattc
aatgtatctgaagaccaattgccatatttgtatatttctatgttgataattgctttaata
tttctaacaggatgtcttgttgggaaaatatgttgtgttcagccacgggatagaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTCTTGCCCAAACCAAACTGA 560 533 1174 Antisense
AAAGGAATTCCGACATATTTCTATG 529 119 1219 Antisense
TTCATATCCAAAACATCCTTCTCAT 197 689 1248 Antisense
TCCTTCTCATACTGATGATCTTTCC 50 593 1263 Antisense
GATCTTTCCTATATAATGGGCGTTC 77 419 1279 Antisense
GATACATCTTGCCAAATCGTACCAA 448 423 1329 Antisense
GGAGAGCCAGGCGGTGGATTTGAAA 144 519 1381 Antisense
AAAAGTAGCCATAACCCGGTCAGCT 11 133 1563 Antisense
AACCCGGTCAGCTAAATTCAATGTA 524 145 1575 Antisense
GTATCTGAAGACCAATTGCCATATT 641 453 1597 Antisense
GTTGTGTTCAGCCACGGGATAGACA 411 435 1685 Antisense
Sequence Source Affymetrix Proprietary Database