[Home] | [Total List]

[189409_at] cytochrome P450

Description C49G7.8 /REP_DB=WormBase Gene ID /WP=CE08866 /TR=O16220 /GB=AAK18902.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_total > 40      4grp_total > 07      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 37.7
(0.9)
A 		7.1
(-3)
A 		38.6
(1)
A 		54.3
(3)
A 		47
B 43.4
(-1.9)
A 		39.7
(-3)
A 		59.4
(3)
A 		49.3
(-0.1)
A 		20
C 60.6
(3)
A 		20.3
(-3)
A 		20.2
(-3)
A 		48.1
(1.1)
A 		40
avr 47.2
(2.3) 		22.4
(-3) 		39.4
(0.6) 		50.6
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 42.9
(2.4)
A 		26.4
(-0.2)
A 		40.3
(2)
A 		46.6
(3)
A 		8.5
(-3)
A 		32.9
(0.8)
A 		38
B 41
(-0.5)
A 		58.3
(1.8)
A 		64.3
(2.6)
A 		67.6
(3)
A 		22.5
(-3)
A 		34.6
(-1.4)
A 		45
C 19.7
(-2.4)
A 		59.4
(3)
M 		26.8
(-1.4)
A 		25.5
(-1.6)
A 		15.3
(-3)
A 		18.7
(-2.5)
A 		44
avr 34.5
(0.5) 		48
(3) 		43.8
(2.2) 		46.6
(2.7) 		15.4
(-3) 		28.7
(-0.6) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13.7
(3)
A 		1.5
(-3)
A 		10.1
(1.2)
A 		7.9
(0.1)
A 		12
B 13.8
(3)
A 		9.8
(-3)
A 		13.8
(3)
A 		10.5
(-2)
A 		4
C 20.1
(3)
A 		5.8
(-3)
A 		7
(-2.5)
A 		8.1
(-2)
A 		14
avr 15.9
(3) 		5.7
(-3) 		10.3
(-0.3) 		8.8
(-1.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.9
(0.5)
A 		9.4
(1.4)
A 		8.8
(1)
A 		11.8
(3)
A 		2.6
(-3)
A 		8
(0.5)
A 		9
B 14.3
(0)
A 		19.4
(3)
A 		15.6
(0.8)
A 		17.9
(2.1)
A 		9.1
(-3)
A 		12.9
(-0.8)
A 		10
C 7.3
(-1.9)
A 		18.1
(3)
M 		6.8
(-2.2)
A 		5.1
(-3)
A 		5
(-3)
A 		6.3
(-2.4)
A 		13
avr 9.8
(-0.5) 		15.6
(3) 		10.4
(-0.1) 		11.6
(0.6) 		5.6
(-3) 		9.1
(-0.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189409_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15300
Sequence Type Exemplar sequence
Representative Public ID C49G7.8 NCBI
Target Description C49G7.8 /REP_DB=WormBase Gene ID /WP=CE08866 /TR=O16220 /GB=AAK18902.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071723 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-35A4) (cyp-35A4) mRNA, complete cds. 11/11 None
SNAP00000008201 ENSEMBL cdna:SNAP chromosome:CEL140:V:4031440:4033200:1 11/11 None
GENEFINDER00000008217 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4031440:4035770:1 11/11 None
C49G7.8 ENSEMBL cdna:known chromosome:CEL140:V:4031440:4033200:1 gene:C49G7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4031439-4033200(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-35A4
Ensembl C49G7.8
Entrez Gene 183622 Entrez gene
SwissProt O16220 EMBL-EBI
WormBase CE08866 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18902 Hypothetical protein C49G7.8 [Caenorhabditis elegans] ref|NP_504124.1| CYtochrome P450 family member (cyp-35A4) [Caenorhabditis elegans] 0.0
blast AAB52315 Cytochrome p450 family protein 35A2 [Caenorhabditis elegans] ref|NP_504880.2| CYtochrome P450 family member (cyp-35A2) [Caenorhabditis elegans] 0.0
blast AAF39921 Cytochrome p450 family protein 35A3 [Caenorhabditis elegans] ref|NP_504121.1| CYtochrome P450 family member (cyp-35A3) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.2E-79
Pfam IPR001128 EMBL-EBI Cytochrome P450 5.6E-78
Sequence
Target Sequence 
>C. ELEGANS:189409_AT
gtgcttcaactccatacctgaatgcaatgattggagagattcaacgtcatgcttcaatcc
ttaatgtaaacttctggaaaatcaacaaagaattcacgtacatgggtggtcaccctgtcg
atgctggagctcttgttactgctcaactaggtactcttcatgttaacgagacagttttcg
aaaacccgctgaagtttgatccagaaagatatattcgagacgagaatctcctccaaaaag
ttattccattcggagttggaaagagaagttgcttgggagaatctttggctagagcagaat
tatatttaatcttcggaaatctccttctccgctataaattcgagtcaagttcaaaactat
caaccaccgagcttgctccatacagcatcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTTCAACTCCATACCTGAATGC 698 479 1064 Antisense
GGAGAGATTCAACGTCATGCTTCAA 287 519 1096 Antisense
GTACATGGGTGGTCACCCTGTCGAT 299 461 1161 Antisense
ACTGCTCAACTAGGTACTCTTCATG 401 97 1201 Antisense
GAAAACCCGCTGAAGTTTGATCCAG 187 355 1243 Antisense
ATTCGAGACGAGAATCTCCTCCAAA 491 9 1276 Antisense
CTCCTCCAAAAAGTTATTCCATTCG 386 235 1291 Antisense
TTAATCTTCGGAAATCTCCTTCTCC 430 683 1369 Antisense
TCCTTCTCCGCTATAAATTCGAGTC 164 223 1385 Antisense
CAAAACTATCAACCACCGAGCTTGC 638 189 1415 Antisense
CCGAGCTTGCTCCATACAGCATCGG 668 263 1430 Antisense
Sequence Source Affymetrix Proprietary Database