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[189408_s_at] 7TM chemoreceptor, str family /// chemoreceptor

Description Y45G12C.6 /REP_DB=WormBase Gene ID /WP=CE21940 /TR=Q9N4Y4 /GB=AAF60582.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 63      4grp_total > 07      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 26.6
(-1)
A 		16.6
(-3)
A 		26.9
(-1)
A 		47.2
(3)
A 		31
B 41.2
(2.4)
A 		22.1
(-3)
A 		43.5
(3)
A 		22.1
(-3)
A 		21
C 17.3
(-1)
A 		8.1
(-3)
A 		8.7
(-2.9)
A 		35.1
(3)
A 		27
avr 28.4
(1) 		15.6
(-3) 		26.4
(0.4) 		34.8
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 17.9
(0.8)
A 		5.2
(-2.3)
A 		6.6
(-1.9)
A 		2.2
(-3)
A 		4.6
(-2.4)
A 		27.3
(3)
A 		25
B 27.1
(0.7)
A 		5.3
(-3)
A 		40.9
(3)
A 		5.3
(-3)
A 		34.1
(1.9)
A 		7
(-2.7)
A 		36
C 4.1
(-3)
A 		10.1
(-2.2)
A 		41.8
(2.2)
A 		48
(3)
A 		18.5
(-1)
A 		20
(-0.8)
A 		44
avr 16.4
(-0.5) 		6.9
(-3) 		29.8
(3) 		18.5
(0) 		19.1
(0.2) 		18.1
(-0.1) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9.7
(3)
A 		3.6
(-3)
A 		7
(0.3)
A 		6.9
(0.2)
A 		6
B 13.1
(3)
A 		5.5
(-2.4)
A 		10.1
(0.9)
A 		4.7
(-3)
A 		8
C 5.7
(2.7)
A 		2.3
(-3)
A 		3
(-1.8)
A 		5.9
(3)
A 		4
avr 9.5
(3) 		3.8
(-3) 		6.7
(0.1) 		5.8
(-0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.3
(-0.3)
A 		1.8
(-1.8)
A 		1.4
(-2.2)
A 		0.6
(-3)
A 		1.4
(-2.2)
A 		6.6
(3)
A 		6
B 9.4
(0.8)
A 		1.8
(-2.8)
A 		9.9
(1.1)
A 		1.4
(-3)
A 		13.9
(3)
A 		2.6
(-2.4)
A 		13
C 1.5
(-3)
A 		3.1
(-1.9)
A 		10.6
(3)
A 		9.7
(2.4)
A 		6
(-0)
A 		6.7
(0.4)
A 		9
avr 4.7
(-0.1) 		2.2
(-3) 		7.3
(3) 		3.9
(-1) 		7.1
(2.8) 		5.3
(0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189408_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15941
Sequence Type Exemplar sequence
Representative Public ID Y45G12C.6 NCBI
Target Description Y45G12C.6 /REP_DB=WormBase Gene ID /WP=CE21940 /TR=Q9N4Y4 /GB=AAF60582.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071293(11), NM_071266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071293 NCBI Caenorhabditis elegans Y45G12C.6 (chemoreceptor) mRNA, complete cds. 11/11 None
NM_071266 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-120) (str-120) mRNA, complete cds. 11/11 A 
GENEFINDER00000043327 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2539912:2545891:1 9/11 None
C13B7.2 ENSEMBL cdna:known chromosome:CEL140:V:2431633:2434553:1 gene:C13B7.2 11/11 A 
Y45G12C.6 ENSEMBL cdna:known chromosome:CEL140:V:2539912:2542832:1 gene:Y45G12C.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043311 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2431632-2434553(+) 100.0 100.0
chrV:2539911-2542832(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
chemoreceptor
Gene Symbol str-120
Ensembl C13B7.2
Y45G12C.6
Entrez Gene 189935 Entrez gene
192001 Entrez gene
SwissProt Q9UAU8 EMBL-EBI
Q9N4Y4 EMBL-EBI
WormBase CE25775 Wormbase
CE21940 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14708 Seven tm receptor protein 120 [Caenorhabditis elegans] ref|NP_503667.1| Seven TM Receptor family member (str-120) [Caenorhabditis elegans] 0.0
blast AAD14707 Serpentine receptor, class t protein 1 [Caenorhabditis elegans] ref|NP_503695.1| Serpentine Receptor, class T family member (srt-2) [Caenorhabditis elegans] ref|NP_503668.1| Serpentine Receptor, class T family member (srt-1) [Caenorhabditis elegans] gb|AAF60589.1| Serpentine receptor, class t protein 2 [Caenorhabditis elegans] 0.0
blast AAD14708 Seven tm receptor protein 120 [Caenorhabditis elegans] ref|NP_503667.1| Seven TM Receptor family member (str-120) [Caenorhabditis elegans] 1.0E-175
blast NP_503694 Y45G12C.6 [Caenorhabditis elegans] gb|AAF60582.1| Hypothetical protein Y45G12C.6 [Caenorhabditis elegans] 1.0E-156
blast AAG24113 Serpentine receptor, class t protein 3 [Caenorhabditis elegans] ref|NP_504175.2| Serpentine Receptor, class T family member (srt-3) [Caenorhabditis elegans] 1.0E-115
blast AAD14708 Seven tm receptor protein 120 [Caenorhabditis elegans] ref|NP_503667.1| Seven TM Receptor family member (str-120) [Caenorhabditis elegans] 1.0E-104
blast NP_503694 Y45G12C.6 [Caenorhabditis elegans] gb|AAF60582.1| Hypothetical protein Y45G12C.6 [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.6E-66
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.3E-37
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.5E-17
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.0E-64
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.5E-116
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503694.1 5 10-29,42-64,89-111,131-153,187-209
NP_503667.1 7 10-29,42-64,89-111,131-153,205-227,248-270,285-307
C13B7.2 7 10-29,42-64,89-111,131-153,205-227,248-270,285-307
Y45G12C.6 5 10-29,42-64,89-111,131-153,187-209
GENEFINDER00000043327 15 10-29,42-64,89-111,131-153,205-227,248-270,285-307,346-365,385-407,420-442,457-479,502-524,550-572,593-615,625-642
Sequence
Target Sequence 
>C. ELEGANS:189408_S_AT
tatcagggactggcctcatgctttatgttggaaccacttttttaccaatttccaaggaat
ttggtcattttatcgccgcattttactgctctacattcgggatttgcgtactatttttgt
cggctcactttttctacagatattcggcggtttgcagtcctcgccttctccgacacttgc
acgggccaaaagtgctgcgacttttgatgccggtatttttcctgggcgccctgatgtttc
tgaatgttacctggtttggagagcctacagaatttaaaatgcactatatgagggagagtt
tgaagcgagagtatggcgatgatagttttgaagttgggcagatttcttcagttttctata
cgctcatcattcaaaccttgattccaatgtgcattttatttattccaactgggttcttgc
taactttgccatttttcgatgtgaaatatgtgggccgcgttacaaatgctccgggagttg
gtgcaagtttatacccggctctggacgcgttgactgctattttgatgatcagagagtttc
gtaccgcttttaaatgtcgctcgcaggctccgattatgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCAGGGACTGGCCTCATGCTTTA 177 659 212 Antisense
TTTATCGCCGCATTTTACTGCTCTA 211 675 280 Antisense
TACTGCTCTACATTCGGGATTTGCG 260 647 295 Antisense
TCGGCTCACTTTTTCTACAGATATT 482 607 331 Antisense
CAGATATTCGGCGGTTTGCAGTCCT 690 205 348 Antisense
GCGACTTTTGATGCCGGTATTTTTC 179 287 408 Antisense
ACTGGGTTCTTGCTAACTTTGCCAT 391 97 619 Antisense
GTTGGTGCAAGTTTATACCCGGCTC 254 435 688 Antisense
CTCTGGACGCGTTGACTGCTATTTT 225 231 710 Antisense
CGTACCGCTTTTAAATGTCGCTCGC 265 247 751 Antisense
TCGCTCGCAGGCTCCGATTATGAAA 393 599 768 Antisense
Sequence Source Affymetrix Proprietary Database