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[189407_at] glutaredoxin

Description F10D7.3 /REP_DB=WormBase Gene ID /WP=CE04353 /TR=SW:Q19297 /GB=AAA81721.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glutaredoxin
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 82      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 71      6grp_total > 81      4grp_total > 57      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 287.2
(-3)
P 		544
(2.3)
P 		578.8
(3)
P 		312.3
(-2.5)
P 		292
B 265
(-2.5)
P 		549.4
(2.1)
P 		605.5
(3)
P 		233
(-3)
P 		373
C 247.4
(-2.5)
P 		544.9
(2.7)
P 		560.5
(3)
P 		221
(-3)
P 		340
avr 266.5
(-2.8) 		546.1
(2.3) 		581.6
(3) 		255.4
(-3) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 495
1 2 3 4 5 6 range
A 247.8
(-2)
P 		212.2
(-3)
P 		322.4
(-0)
P 		434.9
(3)
P 		404.8
(2.2)
P 		261.5
(-1.7)
P 		223
B 267.4
(-0.9)
P 		180.6
(-3)
P 		266.2
(-1)
P 		431.2
(3)
P 		405.8
(2.4)
P 		282
(-0.6)
P 		251
C 248.2
(-1.7)
P 		143.4
(-3)
P 		337.3
(-0.7)
P 		638.5
(3)
P 		409.9
(0.2)
P 		220.8
(-2.1)
P 		495
avr 254.5
(-1.6) 		178.7
(-3) 		308.6
(-0.6) 		501.5
(3) 		406.8
(1.2) 		254.8
(-1.6) 		323
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 104.6
(0.3)
P 		118.1
(1.1)
P 		151.3
(3)
P 		45.7
(-3)
P 		106
B 84.5
(-0.7)
P 		135.7
(2.7)
P 		140.3
(3)
P 		49.7
(-3)
P 		91
C 81.9
(-1.3)
P 		156.7
(1.5)
P 		195.4
(3)
P 		37.3
(-3)
P 		158
avr 90.3
(-0.7) 		136.8
(1.7) 		162.3
(3) 		44.2
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 45.7
(-3)
P 		75.5
(-0.7)
P 		70.2
(-1.1)
P 		110.3
(2.1)
P 		122.1
(3)
P 		63.7
(-1.6)
P 		76
B 93
(-1.1)
P 		60.1
(-3)
P 		64.7
(-2.7)
P 		114.2
(0.1)
P 		164.9
(3)
P 		105.1
(-0.4)
P 		105
C 92
(0.3)
P 		43.7
(-3)
P 		85.9
(-0.2)
P 		128.4
(2.7)
P 		132.6
(3)
P 		73.9
(-1)
P 		89
avr 76.9
(-1.7) 		59.8
(-3) 		73.6
(-2) 		117.6
(1.3) 		139.9
(3) 		80.9
(-1.4) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189407_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17457
Sequence Type Exemplar sequence
Representative Public ID F10D7.3 NCBI
Target Description F10D7.3 /REP_DB=WormBase Gene ID /WP=CE04353 /TR=SW:Q19297 /GB=AAA81721.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glutaredoxin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078414(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078414 NCBI Caenorhabditis elegans F10D7.3 (glutaredoxin) mRNA, complete cds. 10/11 None
GENEFINDER00000025757 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17371806:17381730:-1 9/11 None
SNAP00000025748 ENSEMBL cdna:SNAP chromosome:CEL140:X:17373464:17374663:-1 9/11 None
F10D7.3 ENSEMBL cdna:known chromosome:CEL140:X:17372248:17374788:-1 gene:F10D7.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17372494-17374791(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutaredoxin
Ensembl F10D7.3
Entrez Gene 181766 Entrez gene
SwissProt Q19297 EMBL-EBI
WormBase CE29754 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81722 Hypothetical protein F10D7.4 [Caenorhabditis elegans] ref|NP_510816.1| F10D7.4 [Caenorhabditis elegans] 1.0E-133
blast AAA81721 Hypothetical protein F10D7.3 [Caenorhabditis elegans] ref|NP_510815.2| F10D7.3 [Caenorhabditis elegans] sp|Q19297|YZ73_CAEEL Hypothetical protein F10D7.3 in chromosome X 2.0E-58
blast T16026 hypothetical protein F10D7.3 - Caenorhabditis elegans 4.0E-58
blast AAA81721 Hypothetical protein F10D7.3 [Caenorhabditis elegans] ref|NP_510815.2| F10D7.3 [Caenorhabditis elegans] sp|Q19297|YZ73_CAEEL Hypothetical protein F10D7.3 in chromosome X 3.0E-52
blast AAA81721 Hypothetical protein F10D7.3 [Caenorhabditis elegans] ref|NP_510815.2| F10D7.3 [Caenorhabditis elegans] sp|Q19297|YZ73_CAEEL Hypothetical protein F10D7.3 in chromosome X 4.0E-51
blast T16026 hypothetical protein F10D7.3 - Caenorhabditis elegans 1.0E-50
blast T16026 hypothetical protein F10D7.3 - Caenorhabditis elegans 2.0E-50
blast CAE69682 Hypothetical protein CBG15935 [Caenorhabditis briggsae] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR002109 EMBL-EBI Glutaredoxin 1.4E-22
Pfam IPR002109 EMBL-EBI Glutaredoxin 1.4E-22
Pfam IPR002109 EMBL-EBI Glutaredoxin 4.9E-22
Sequence
Target Sequence 
>C. ELEGANS:189407_AT
gggaaattgctactgttcacgcagaattatccaagaagaaggaagataaaacgttgaagg
atttggaggataaaattgttaatgatgttatgacgcataaagttatggtatacagtaaaa
cctattgcccatggagcaaacgtctgaaggctattcttgccaactatgaaattgatgaca
tgaagattgttgagcttgatcgatcaaatcagactgaggaaatgcaggaaattctcaaaa
agtactctggaagaacgacagttccccaattattcatcagtgggaagttcgtgggtggtc
acgatgagactaaggcaatcgaggagaaaggagagctgaggccacttttggagaaagctc
acgccttgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAATTGCTACTGTTCACGCAGA 12 495 56 Antisense
CAGTAAAACCTATTGCCCATGGAGC 226 207 168 Antisense
GCCCATGGAGCAAACGTCTGAAGGC 240 287 182 Antisense
GTCTGAAGGCTATTCTTGCCAACTA 517 469 197 Antisense
GAAGATTGTTGAGCTTGATCGATCA 20 339 237 Antisense
ACTCTGGAAGAACGACAGTTCCCCA 417 85 299 Antisense
GACAGTTCCCCAATTATTCATCAGT 141 369 312 Antisense
ATCAGTGGGAAGTTCGTGGGTGGTC 191 3 331 Antisense
GGGTGGTCACGATGAGACTAAGGCA 638 497 348 Antisense
AGGAGAGCTGAGGCCACTTTTGGAG 261 55 384 Antisense
TTGGAGAAAGCTCACGCCTTGTTCA 228 709 403 Antisense
Sequence Source Affymetrix Proprietary Database