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[189406_at]

Description C07E3.7 /REP_DB=WormBase Gene ID /WP=CE02122 /TR=Q17789 /GB=CAA90097.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=homeobox protein
Cluster 6grp_high1_10_10 > 44      4grp_high_8_8 > 19      6grp_total > 44      4grp_total > 29      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 93.7
(-0.5)
P 		94.3
(-0.5)
P 		69.3
(-3)
A 		128.6
(3)
P 		59
B 119
(3)
P 		105
(1.5)
P 		61.9
(-3)
A 		98.3
(0.8)
P 		57
C 105.5
(1.5)
M 		91.2
(-0.3)
M 		69.7
(-3)
P 		117.2
(3)
P 		48
avr 106.1
(1.9) 		96.8
(0.7) 		67
(-3) 		114.7
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 84.6
(-0.9)
P 		74.5
(-1.7)
A 		131.3
(3)
P 		87.2
(-0.7)
P 		58.9
(-3)
P 		63.8
(-2.6)
P 		72
B 87.1
(-1)
P 		124.9
(3)
P 		68.2
(-3)
P 		104
(0.8)
P 		104.9
(0.9)
P 		115
(2)
P 		57
C 97.8
(2.6)
P 		97.9
(2.6)
P 		100.4
(3)
P 		61.8
(-3)
A 		73
(-1.3)
P 		73.4
(-1.2)
M 		39
avr 89.8
(0.1) 		99.1
(2.7) 		100
(3) 		84.3
(-1.5) 		78.9
(-3) 		84.1
(-1.5) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 34.1
(3)
P 		20.5
(-2.1)
P 		18.1
(-3)
A 		18.8
(-2.7)
P 		16
B 38
(3)
P 		25.9
(-0.1)
P 		14.3
(-3)
A 		20.9
(-1.3)
P 		24
C 34.9
(3)
M 		26.2
(-0.5)
M 		24.3
(-1.2)
P 		19.8
(-3)
P 		15
avr 35.7
(3) 		24.2
(-1.1) 		18.9
(-3) 		19.8
(-2.7) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 15.6
(-3)
P 		26.5
(2)
A 		28.6
(3)
P 		22.1
(0)
P 		17.8
(-1.9)
P 		15.5
(-3)
P 		13
B 30.3
(0.1)
P 		41.6
(2.7)
P 		16.6
(-3)
P 		27.5
(-0.5)
P 		42.6
(2.9)
P 		42.9
(3)
P 		26
C 36.2
(3)
P 		29.9
(1.4)
P 		25.5
(0.3)
P 		12.4
(-3)
A 		23.6
(-0.2)
P 		24.6
(0.1)
M 		24
avr 27.4
(0.3) 		32.7
(3) 		23.6
(-1.6) 		20.7
(-3) 		28
(0.6) 		27.7
(0.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189406_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3802
Sequence Type Exemplar sequence
Representative Public ID C07E3.7 NCBI
Target Description C07E3.7 /REP_DB=WormBase Gene ID /WP=CE02122 /TR=Q17789 /GB=CAA90097.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=homeobox protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063833
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000023207 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10367822:10369492:-1 None
NM_063833 NCBI Caenorhabditis elegans C07E3.6 (C07E3.6) mRNA, complete cds. None
C07E3.6 ENSEMBL cdna:known chromosome:CEL140:II:10367822:10369507:-1 gene:C07E3.6 A 
SNAP00000023203 ENSEMBL cdna:SNAP chromosome:CEL140:II:10367822:10369471:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10367818-10368055(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07E3.6
Entrez Gene 182371 Entrez gene
SwissProt Q17792 EMBL-EBI
WormBase CE35825 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90100 Hypothetical protein C07E3.6 [Caenorhabditis elegans] ref|NP_496234.3| C07E3.6 [Caenorhabditis elegans] 1.0E-160
blast CAA90100 Hypothetical protein C07E3.6 [Caenorhabditis elegans] ref|NP_496234.3| C07E3.6 [Caenorhabditis elegans] 1.0E-156
blast CAE59382 Hypothetical protein CBG02738 [Caenorhabditis briggsae] 2.0E-41
blast T19053 hypothetical protein C07E3.7 - Caenorhabditis elegans 7.0E-12
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 6.99999988529321E-11
Pfam IPR001356 EMBL-EBI Homeobox 1.3E-8
Pfam IPR001356 EMBL-EBI Homeobox 1.3E-8
Sequence
Target Sequence 
>C. ELEGANS:189406_AT
atgaggaggacccgaatgcgtgtgcggatcctaggaaacgtgagacaatgtgcaagactt
tatcgattgattatcatagagtacgtcccaaaaaaattatttctagtcaaacttctaaaa
tgttctgctttccagcttaaagtatggttccaaaatcgacgacgaaaggacaaggttcga
tcgcaagaagaagctgccacaaccttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGGAGGACCCGAATGCGTGTGC 660 45 13 Antisense
GAATGCGTGTGCGGATCCTAGGAAA 294 331 26 Antisense
CGGATCCTAGGAAACGTGAGACAAT 537 243 37 Antisense
GTGAGACAATGTGCAAGACTTTATC 594 481 52 Antisense
TGTGCAAGACTTTATCGATTGATTA 296 557 61 Antisense
GATTATCATAGAGTACGTCCCAAAA 637 429 81 Antisense
TTATTTCTAGTCAAACTTCTAAAAT 549 677 109 Antisense
CTTCTAAAATGTTCTGCTTTCCAGC 310 219 124 Antisense
GCTTTCCAGCTTAAAGTATGGTTCC 312 303 139 Antisense
GAAAGGACAAGGTTCGATCGCAAGA 420 359 176 Antisense
GCAAGAAGAAGCTGCCACAACCTTT 302 319 195 Antisense
Sequence Source Affymetrix Proprietary Database