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[189403_s_at]

Description F14F4.3A /REP_DB=WormBase Gene ID /WP=CE23649 /TR=O62170 /GB=CAB54226.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ABC transporter
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 39      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 50      6grp_total > 28      4grp_total > 60      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 334
1 2 3 4 range
A 837.9
(1.5)
P 		914.3
(3)
P 		847
(1.6)
P 		616.9
(-3)
P 		297
B 851.7
(2.5)
P 		731.3
(-3)
P 		863
(3)
P 		736.3
(-2.8)
P 		132
C 868.2
(1.5)
P 		891.4
(1.9)
P 		950.9
(3)
P 		624.6
(-3)
P 		326
avr 852.6
(2.1) 		845.7
(1.9) 		887
(3) 		659.3
(-3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 492
1 2 3 4 5 6 range
A 628.8
(2.6)
P 		650.5
(3)
P 		346.3
(-3)
P 		457.5
(-0.8)
P 		521.9
(0.5)
P 		616.8
(2.3)
P 		304
B 640.8
(3)
P 		483.4
(-1)
P 		403.9
(-3)
P 		456.6
(-1.7)
P 		431
(-2.3)
P 		558.3
(0.9)
P 		237
C 838.6
(3)
P 		494
(-1.5)
P 		489.6
(-1.6)
P 		383.4
(-3)
P 		579.2
(-0.4)
P 		496.4
(-1.5)
P 		455
avr 702.7
(3) 		542.6
(-0.3) 		413.3
(-3) 		432.5
(-2.6) 		510.7
(-1) 		557.2
(-0) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 305.1
(3)
P 		198.5
(0)
P 		221.4
(0.7)
P 		90.3
(-3)
P 		215
B 271.6
(3)
P 		180.6
(-1.8)
P 		200
(-0.7)
P 		156.9
(-3)
P 		115
C 287.4
(1.8)
P 		256.3
(1)
P 		331.4
(3)
P 		105.3
(-3)
P 		226
avr 288
(3) 		211.8
(0.3) 		250.9
(1.7) 		117.5
(-3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 115.9
(-1.4)
P 		231.3
(3)
P 		75.4
(-3)
P 		116
(-1.4)
P 		157.5
(0.2)
P 		150.2
(-0.1)
P 		156
B 223
(3)
P 		160.9
(0)
P 		98.1
(-3)
P 		120.9
(-1.9)
P 		175.1
(0.7)
P 		208.2
(2.3)
P 		125
C 310.8
(3)
P 		150.7
(-1.1)
P 		124.6
(-1.8)
P 		77.1
(-3)
P 		187.4
(-0.2)
P 		166.2
(-0.7)
P 		234
avr 216.6
(3) 		181
(1.2) 		99.4
(-3) 		104.7
(-2.7) 		173.3
(0.8) 		174.9
(0.9) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189403_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17345
Sequence Type Exemplar sequence
Representative Public ID F14F4.3A NCBI
Target Description F14F4.3A /REP_DB=WormBase Gene ID /WP=CE23649 /TR=O62170 /GB=CAB54226.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ABC transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078077(11), NM_078078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078077 NCBI Caenorhabditis elegans Multidrug Resistance Protein family member (mrp-5) (mrp-5) mRNA, complete cds. 11/11 None
NM_078078 NCBI Caenorhabditis elegans Multidrug Resistance Protein family member (mrp-5) (mrp-5) mRNA, complete cds. 11/11 None
F14F4.3a ENSEMBL cdna:known chromosome:CEL140:X:14938429:14946233:-1 gene:F14F4.3 11/11 None
F14F4.3b ENSEMBL cdna:known chromosome:CEL140:X:14938858:14946233:-1 gene:F14F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14938857-14946233(-) 100.0 100.0
Public Domain and Genome References
Ensembl F14F4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54251 Hypothetical protein F14F4.3a [Caenorhabditis elegans] emb|CAB54226.1| Hypothetical protein F14F4.3a [Caenorhabditis elegans] ref|NP_510478.1| Multidrug Resistance Protein family member (mrp-5) [Caenorhabditis elegans] 0.0
blast CAB54250 Hypothetical protein F14F4.3b [Caenorhabditis elegans] emb|CAB54225.1| Hypothetical protein F14F4.3b [Caenorhabditis elegans] ref|NP_510479.1| Multidrug Resistance Protein family member (mrp-5) [Caenorhabditis elegans] 0.0
blast H89715 protein F14F4.3 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001140 EMBL-EBI ABC transporter, transmembrane region 6.2E-7
Pfam IPR001140 EMBL-EBI ABC transporter, transmembrane region 5.4E-21
Pfam IPR003439 EMBL-EBI ABC transporter 2.6E-23
Pfam IPR003439 EMBL-EBI ABC transporter 8.8E-53
Pfam IPR001140 EMBL-EBI ABC transporter, transmembrane region 5.4E-21
Pfam IPR003439 EMBL-EBI ABC transporter 5.9E-32
Pfam IPR003439 EMBL-EBI ABC transporter 8.8E-53
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510478.1 12 146-168,186-208,266-288,293-315,374-396,409-431,747-769,810-832,880-902,906-928,993-1015,1025-1043
NP_510479.1 12 146-168,186-208,266-288,293-315,374-396,409-431,774-796,837-859,907-929,933-955,1020-1042,1052-1070
F14F4.3a 12 146-168,186-208,266-288,293-315,374-396,409-431,747-769,810-832,880-902,906-928,993-1015,1025-1043
F14F4.3b 12 146-168,186-208,266-288,293-315,374-396,409-431,774-796,837-859,907-929,933-955,1020-1042,1052-1070
Sequence
Target Sequence 
>C. ELEGANS:189403_S_AT
ggtggaaataacttctccgtcggagaacgacagctgttctgtttggctcgtgctttgttg
atgaagtcccgaattgtgattcttgatgaggcaacagcttcagtggatgccggtacagat
aagcttattcaagaagtgattaaaaccgtgtttgccgatgctactgtgattatcattgct
catcgtctcgacaacgttcgtaacatggatcgtataatgcacctgaaaaatggaaaactc
ataaatttcacaactccacaagaaatgtttaaagatgattggtcggtttacaagctggaa
gacaaagacgatgatcaacattctgcggtggtagttggagaaaatagtgagcactcgatg
gaaaagagttcccagggaagcagtcaagaatccgacgatattgtaaaagtagagaatgag
cagaaagatagctcggatgatgtcgttcacattgaaagcggcgatgatgacgtcaaggcg
gactcttctgaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGAAATAACTTCTCCGTCGGAG 222 483 3679 Antisense
GAACGACAGCTGTTCTGTTTGGCTC 368 347 3703 Antisense
GTTTGGCTCGTGCTTTGTTGATGAA 140 453 3719 Antisense
ACAGCTTCAGTGGATGCCGGTACAG 184 109 3772 Antisense
CGTGTTTGCCGATGCTACTGTGATT 254 245 3825 Antisense
GTGATTATCATTGCTCATCGTCTCG 512 483 3844 Antisense
TCATCGTCTCGACAACGTTCGTAAC 142 611 3858 Antisense
AACTCATAAATTTCACAACTCCACA 265 141 3914 Antisense
GATGATCAACATTCTGCGGTGGTAG 156 411 3988 Antisense
GATAGCTCGGATGATGTCGTTCACA 68 425 4105 Antisense
ACGTCAAGGCGGACTCTTCTGAAGT 172 95 4148 Antisense
Sequence Source Affymetrix Proprietary Database