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[189402_s_at]

Description T10H9.5 /REP_DB=WormBase Gene ID /WP=CE18253 /TR=O76414 /GB=AAC19238.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ABC transporter
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 62      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 43      6grp_total > 61      4grp_total > 56      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2266
1 2 3 4 range
A 925.9
(-1.7)
P 		1040.8
(-1.4)
P 		2690
(3)
P 		424.1
(-3)
P 		2266
B 858.5
(-2)
P 		1279.6
(-0.8)
P 		2628.2
(3)
P 		523.2
(-3)
P 		2105
C 846.2
(-2.3)
P 		1104.7
(-1.4)
P 		2369.9
(3)
P 		649.9
(-3)
P 		1720
avr 876.9
(-2) 		1141.7
(-1.2) 		2562.7
(3) 		532.4
(-3) 		2030

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1066
1 2 3 4 5 6 range
A 673
(-2.8)
P 		1123.8
(-0.1)
P 		1643.4
(3)
P 		1625.1
(2.9)
P 		950.1
(-1.1)
P 		631.7
(-3)
P 		1012
B 654.6
(-3)
P 		1183.2
(0.2)
P 		1645
(3)
P 		1603.4
(2.7)
P 		947.2
(-1.2)
P 		728.5
(-2.6)
P 		990
C 579.5
(-3)
P 		1132.4
(0.2)
P 		1629.3
(3)
P 		1485.6
(2.2)
P 		864.2
(-1.4)
P 		763.5
(-1.9)
P 		1050
avr 635.7
(-3) 		1146.5
(0.1) 		1639.2
(3) 		1571.4
(2.6) 		920.5
(-1.3) 		707.9
(-2.6) 		1004
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 764
1 2 3 4 range
A 337.1
(-0.4)
P 		225.9
(-1.5)
P 		703.2
(3)
P 		62.1
(-3)
P 		641
B 273.8
(-1)
P 		316
(-0.5)
P 		609
(3)
P 		111.5
(-3)
P 		498
C 280.1
(-1.6)
P 		317.6
(-1.3)
P 		826
(3)
P 		109.6
(-3)
P 		716
avr 297
(-1) 		286.5
(-1.1) 		712.7
(3) 		94.4
(-3) 		618

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 124.1
(-3)
P 		399.7
(2.7)
P 		357.9
(1.9)
P 		412.2
(3)
P 		286.7
(0.4)
P 		153.8
(-2.4)
P 		288
B 227.8
(-3)
P 		393.8
(2.1)
P 		399.5
(2.2)
P 		424.7
(3)
P 		384.8
(1.8)
P 		271.6
(-1.7)
P 		197
C 214.8
(-3)
P 		345.5
(0.9)
P 		414.7
(3)
P 		298.7
(-0.5)
P 		279.6
(-1.1)
P 		255.6
(-1.8)
P 		200
avr 188.9
(-3) 		379.7
(2.7) 		390.7
(3) 		378.5
(2.6) 		317
(0.8) 		227
(-1.9) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189402_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12191
Sequence Type Exemplar sequence
Representative Public ID T10H9.5 NCBI
Target Description T10H9.5 /REP_DB=WormBase Gene ID /WP=CE18253 /TR=O76414 /GB=AAC19238.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ABC transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072288(11), NM_001028960(10), NM_182335(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072288 NCBI Caenorhabditis elegans Peroxisomal Membrane Protein related family member (pmp-5) (pmp-5) mRNA, complete cds. 11/11 None
NM_001028960 NCBI Caenorhabditis elegans Peroxisomal Membrane Protein related family member (pmp-5) (pmp-5) mRNA, complete cds. 10/11 None
NM_182335 NCBI Caenorhabditis elegans Peroxisomal Membrane Protein related family member (pmp-5) (pmp-5) mRNA, complete cds. 11/11 None
SNAP00000019219 ENSEMBL cdna:SNAP chromosome:CEL140:V:6664853:6668402:-1 11/11 None
GENEFINDER00000019223 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6664853:6671435:-1 11/11 None
T10H9.5a.2 ENSEMBL cdna:known chromosome:CEL140:V:6664786:6668409:-1 gene:T10H9.5 11/11 None
T10H9.5a.1 ENSEMBL cdna:known chromosome:CEL140:V:6664786:6668407:-1 gene:T10H9.5 11/11 None
T10H9.5a.3 ENSEMBL cdna:known chromosome:CEL140:V:6664804:6668409:-1 gene:T10H9.5 11/11 None
T10H9.5b ENSEMBL cdna:known chromosome:CEL140:V:6664853:6668402:-1 gene:T10H9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6664853-6668403(-) 100.0 100.0
Public Domain and Genome References
Ensembl T10H9.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504689 Peroxisomal Membrane Protein related family member (pmp-5) [Caenorhabditis elegans] gb|AAC19238.1| Peroxisomal membrane protein related protein 5, isoform a [Caenorhabditis elegans] 0.0
blast NP_872135 Peroxisomal Membrane Protein related family member (pmp-5) [Caenorhabditis elegans] gb|AAO25995.2| Peroxisomal membrane protein related protein 5, isoform b [Caenorhabditis elegans] 0.0
blast NP_001024131 Peroxisomal Membrane Protein related family member (pmp-5) [Caenorhabditis elegans] gb|AAX88812.1| Peroxisomal membrane protein related protein 5, isoform c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 5.3E-15
Pfam IPR003439 EMBL-EBI ABC transporter 5.3E-15
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.8E-12
Pfam IPR003439 EMBL-EBI ABC transporter 5.3E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504689.1 5 21-43,79-101,150-172,182-204,274-296
NP_001024131.1 5 21-43,79-101,150-172,182-204,274-296
NP_872135.2 5 21-43,79-101,150-172,182-204,274-296
T10H9.5a.2 5 21-43,79-101,150-172,182-204,274-296
T10H9.5a.1 5 21-43,79-101,150-172,182-204,274-296
T10H9.5a.3 5 21-43,79-101,150-172,182-204,274-296
T10H9.5b 5 21-43,79-101,150-172,182-204,274-296
SNAP00000019219 5 21-43,79-101,150-172,182-204,274-296
GENEFINDER00000019223 12 10-32,45-64,91-113,133-155,202-224,253-275,285-307,407-429,461-483,532-554,564-586,656-678
Sequence
Target Sequence 
>C. ELEGANS:189402_S_AT
acattccacttgcctcgtaacaagacattgcttatcaccggagacagtggaatcggaaaa
acgtcgttgatgagagtgattgccgatatgtggcctcatcaaggcatcttgaaaaaacac
tttaaaaagacagatgcctatttcttaccgcagaaaccatatttcccagtgggaaggttg
tctctgaaacagcaacttgttttcccagcagaggaaaatgaagagaaatccggaaatgat
gaggaaatcgttcgaattctgcatgaattgaaacttgggcacttgttgccaattgtggga
aatattcatgatagcgttgattttgaatggcaagaaacgctgtccccaggcgagcaacag
cgcctgtgttttgctagaatgatcttagcagagccaacagtcgcgttcctcgatgagtcg
acttgcaacgtggatgaaggaatggagaacgcaatgtatgaaatgctcagaaagcattca
atcacctacatctccgttggccaccgcaaatctctccgaagccatcacgattttgagctt
cgaattccatcttcatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATTCCACTTGCCTCGTAACAAGA 571 103 1213 Antisense
ATTGCCGATATGTGGCCTCATCAAG 294 7 1291 Antisense
ACAGATGCCTATTTCTTACCGCAGA 127 109 1342 Antisense
AGCAACTTGTTTTCCCAGCAGAGGA 249 77 1403 Antisense
GCGAGCAACAGCGCCTGTGTTTTGC 59 291 1562 Antisense
GATCTTAGCAGAGCCAACAGTCGCG 598 419 1593 Antisense
CAGTCGCGTTCCTCGATGAGTCGAC 468 207 1610 Antisense
TGAGTCGACTTGCAACGTGGATGAA 228 567 1626 Antisense
GAAAGCATTCAATCACCTACATCTC 49 361 1682 Antisense
TCTCCGAAGCCATCACGATTTTGAG 287 609 1725 Antisense
GAGCTTCGAATTCCATCTTCATCGT 339 387 1747 Antisense
Sequence Source Affymetrix Proprietary Database