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[189398_at] cytochrome P450

Description K07C6.2 /REP_DB=WormBase Gene ID /WP=CE17173 /TR=O44652 /GB=AAB94245.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_total > 53      4grp_total > 35      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 15.4
(-2.6)
A 		11.6
(-3)
A 		49.6
(1.4)
A 		62.9
(3)
A 		51
B 24.9
(-1.8)
A 		82.1
(3)
A 		10.8
(-3)
A 		57.3
(0.9)
P 		71
C 72.3
(1)
A 		102.6
(3)
A 		11.8
(-3)
A 		48.2
(-0.6)
A 		91
avr 37.5
(-1.1) 		65.4
(3) 		24.1
(-3) 		56.1
(1.6) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 57.3
(-0)
A 		4.9
(-2.9)
A 		112.2
(3)
A 		3.3
(-3)
A 		85.1
(1.5)
A 		52.7
(-0.3)
A 		109
B 73.4
(0.6)
A 		56.1
(-0.9)
A 		100.5
(3)
A 		66.7
(0.1)
A 		35.1
(-2.7)
A 		31.5
(-3)
A 		69
C 40.9
(-3)
A 		41.1
(-3)
A 		75.9
(3)
A 		72
(2.3)
A 		51.7
(-1.1)
A 		50.5
(-1.4)
A 		35
avr 57.2
(-0.8) 		34
(-3) 		96.2
(3) 		47.3
(-1.7) 		57.3
(-0.8) 		44.9
(-1.9) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 5.6
(-1.2)
A 		2.5
(-3)
A 		13
(3)
A 		9.2
(0.8)
A 		11
B 7.9
(-1.2)
A 		20.3
(3)
A 		2.5
(-3)
A 		12.2
(0.3)
P 		18
C 23.9
(1.7)
A 		29.5
(3)
A 		4.1
(-3)
A 		8.1
(-2.1)
A 		25
avr 12.5
(0.3) 		17.4
(3) 		6.5
(-3) 		9.8
(-1.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 10.6
(-0.6)
A 		1.8
(-2.8)
A 		24.4
(2.7)
A 		0.8
(-3)
A 		25.7
(3)
A 		12.8
(-0.1)
A 		25
B 25.6
(3)
A 		18.7
(0)
A 		24.4
(2.5)
A 		17.7
(-0.4)
A 		14.3
(-1.9)
A 		11.7
(-3)
A 		14
C 15.2
(-0.6)
A 		12.5
(-3)
A 		19.3
(3)
A 		14.5
(-1.2)
A 		16.7
(0.7)
A 		16.9
(0.9)
A 		7
avr 17.1
(0.1) 		11
(-3) 		22.7
(3) 		11
(-3) 		18.9
(1.1) 		13.8
(-1.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189398_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15088
Sequence Type Exemplar sequence
Representative Public ID K07C6.2 NCBI
Target Description K07C6.2 /REP_DB=WormBase Gene ID /WP=CE17173 /TR=O44652 /GB=AAB94245.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071694(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071694 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-35B3) (cyp-35B3) mRNA, complete cds. 11/11 None
SNAP00000025769 ENSEMBL cdna:SNAP chromosome:CEL140:V:3945631:3946857:1 11/11 None
GENEFINDER00000025774 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3945166:3946857:1 11/11 None
K07C6.2 ENSEMBL cdna:known chromosome:CEL140:V:3945166:3946857:1 gene:K07C6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3945165-3946857(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-35B3
Ensembl K07C6.2
Entrez Gene 187092 Entrez gene
SwissProt O44652 EMBL-EBI
WormBase CE17173 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94245 Cytochrome p450 family protein 35B3 [Caenorhabditis elegans] ref|NP_504095.1| CYtochrome P450 family member (cyp-35B3) [Caenorhabditis elegans] 0.0
blast AAB94246 Cytochrome p450 family protein 35B2 [Caenorhabditis elegans] ref|NP_504094.1| CYtochrome P450 family member (cyp-35B2) [Caenorhabditis elegans] 0.0
blast CAE58284 Hypothetical protein CBG01391 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-141
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.4E-92
Pfam IPR001128 EMBL-EBI Cytochrome P450 6.8E-62
Sequence
Target Sequence 
>C. ELEGANS:189398_AT
attgcggatctttggctagctggacaggatactaccgcgacaactttggtctctggtttc
aatcaacttgttaacaatccggaggttatgcgcaagtgtcgtgaggagattatgaagatt
acagaaaacggttatcgtccacttcagttgaaagacagagctgaaactcattacctaaat
gcaacgattgctgaaattcaacgtcacgcttcaattttgaatgtcaacttttggaggctt
gttcatgagccgacaattgtgaatggttatgaaattgacgccggagcagttatcacctcc
caacttggagctctccatgtaaataacgatatcttcaaggatccctccaagttctatccg
gagagatttattgaaaacgggaaacttcttaatcaaataatcccatttggaattggaaaa
cgatcatgcgtcggtgagaatatcgccagatctgaattgtatttaatgattggaaactta
ttgctccgatatgacatcaaaccccatggctcgttaccttccttagatgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCGGATCTTTGGCTAGCTGGAC 270 7 916 Antisense
AGCTGGACAGGATACTACCGCGACA 366 79 933 Antisense
TACCGCGACAACTTTGGTCTCTGGT 343 647 948 Antisense
AATCCGGAGGTTATGCGCAAGTGTC 619 167 991 Antisense
AAACGGTTATCGTCCACTTCAGTTG 303 127 1041 Antisense
ATTGACGCCGGAGCAGTTATCACCT 592 3 1189 Antisense
GTTATCACCTCCCAACTTGGAGCTC 499 447 1204 Antisense
GATATCTTCAAGGATCCCTCCAAGT 688 425 1243 Antisense
GAAACTTATTGCTCCGATATGACAT 139 357 1388 Antisense
CGATATGACATCAAACCCCATGGCT 231 247 1402 Antisense
GCTCGTTACCTTCCTTAGATGACAA 170 299 1424 Antisense
Sequence Source Affymetrix Proprietary Database