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[189396_at] beta transducin

Description C18E3.5 /REP_DB=WormBase Gene ID /WP=CE27713 /TR=O02097 /GB=AAK68197.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=beta transducin
Cluster 6grp_total > 96      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 37
(-3)
A 		102.5
(-0.1)
A 		114.2
(0.4)
P 		171.8
(3)
P 		135
B 52.5
(-3)
A 		65.3
(-2.6)
A 		131.5
(-0.5)
P 		241
(3)
P 		189
C 48
(-3)
A 		87.4
(-2)
P 		133.2
(-0.9)
P 		296.8
(3)
P 		249
avr 45.8
(-3) 		85.1
(-1.8) 		126.3
(-0.5) 		236.5
(3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 476
1 2 3 4 5 6 range
A 17.7
(-3)
A 		55.2
(-2.5)
A 		107
(-1.8)
P 		198.7
(-0.6)
P 		375.6
(1.7)
P 		475.3
(3)
P 		458
B 38.5
(-3)
A 		46.3
(-2.9)
A 		108.2
(-1.9)
P 		221.6
(-0.1)
P 		411.2
(3)
P 		392.1
(2.7)
P 		373
C 25.2
(-3)
A 		68.9
(-2.4)
A 		103.7
(-2)
P 		175.1
(-1.1)
P 		350.2
(1.2)
P 		493.9
(3)
P 		469
avr 27.1
(-3) 		56.8
(-2.6) 		106.3
(-1.9) 		198.5
(-0.6) 		379
(1.9) 		453.8
(3) 		427
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 13.5
(-3)
A 		22.3
(0.2)
A 		29.9
(3)
P 		25.1
(1.2)
P 		16
B 16.7
(-2.9)
A 		16.1
(-3)
A 		30.5
(-0.6)
P 		51.4
(3)
P 		35
C 15.9
(-3)
A 		25.1
(-1.4)
P 		46.4
(2.4)
P 		50
(3)
P 		34
avr 15.4
(-3) 		21.2
(-1.7) 		35.6
(1.5) 		42.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 3.3
(-3)
A 		19.6
(-2.1)
A 		23.3
(-1.9)
P 		50.4
(-0.5)
P 		113.4
(2.9)
P 		115.7
(3)
P 		112
B 13.4
(-3)
A 		15.4
(-2.9)
A 		26.3
(-2.5)
P 		58.7
(-1.2)
P 		167.1
(3)
P 		146.2
(2.2)
P 		154
C 9.4
(-3)
A 		21
(-2.6)
A 		26.4
(-2.3)
P 		35.2
(-2)
P 		113.3
(1)
P 		165.3
(3)
P 		156
avr 8.7
(-3) 		18.7
(-2.6) 		25.3
(-2.3) 		48.1
(-1.2) 		131.3
(2.5) 		142.4
(3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189396_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.953
Sequence Type Exemplar sequence
Representative Public ID C18E3.5 NCBI
Target Description C18E3.5 /REP_DB=WormBase Gene ID /WP=CE27713 /TR=O02097 /GB=AAK68197.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=beta transducin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058924(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058924 NCBI Caenorhabditis elegans C18E3.5 (C18E3.5) mRNA, complete cds. 11/11 A 
SNAP00000003656 ENSEMBL cdna:SNAP chromosome:CEL140:I:4193250:4197994:1 11/11 None
GENEFINDER00000003667 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4195598:4203173:1 10/11 None
C18E3.5 ENSEMBL cdna:known chromosome:CEL140:I:4193243:4203293:1 gene:C18E3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4193249-4197376(+) 100.0 100.0
Public Domain and Genome References
Gene Title beta transducin
Ensembl C18E3.5
Entrez Gene 172015 Entrez gene
SwissProt O02097 EMBL-EBI
WormBase CE27713 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68197 Hypothetical protein C18E3.5 [Caenorhabditis elegans] ref|NP_491325.1| C18E3.5 [Caenorhabditis elegans] 0.0
blast T15181 hypothetical protein C18E3.5 - Caenorhabditis elegans 1.0E-180
blast T15181 hypothetical protein C18E3.5 - Caenorhabditis elegans 1.0E-178
blast CAE66746 Hypothetical protein CBG12096 [Caenorhabditis briggsae] 1.0E-133
blast CAE66746 Hypothetical protein CBG12096 [Caenorhabditis briggsae] 1.0E-132
blast AAK68197 Hypothetical protein C18E3.5 [Caenorhabditis elegans] ref|NP_491325.1| C18E3.5 [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.6E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.1E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.017
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.5E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0044
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.017
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.5E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0044
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-7
Sequence
Target Sequence 
>C. ELEGANS:189396_AT
gtcatggttcacgatatgcggagcaaggaagcggcgaaaaagtttatctgcaaataccaa
cagacggctgtcacgttcaacgatgccgcggataatgttatttgtggaggaattgacaat
cagattaaggtctgggacatgctccgaaatgacgtcagatatgtgctctccggacaccgc
gatacgatcacttctctttctgtcagtcataatggaaactttttgctttccaactcgatg
gattgttctttgatgagttgggatattcgaccatttgttcctgctcagaggctcgttgcc
agatatcaaggagcttcgcataattttgaaaagaatcttttgaaatgcggctggtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATGGTTCACGATATGCGGAGCA 378 467 523 Antisense
AACAGACGGCTGTCACGTTCAACGA 583 133 581 Antisense
TCACGTTCAACGATGCCGCGGATAA 261 625 593 Antisense
GATTAAGGTCTGGGACATGCTCCGA 56 423 645 Antisense
GGGACATGCTCCGAAATGACGTCAG 263 495 656 Antisense
AATGACGTCAGATATGTGCTCTCCG 172 165 670 Antisense
TCACTTCTCTTTCTGTCAGTCATAA 397 625 710 Antisense
GATGGATTGTTCTTTGATGAGTTGG 597 407 759 Antisense
CTGCTCAGAGGCTCGTTGCCAGATA 36 239 803 Antisense
GCCAGATATCAAGGAGCTTCGCATA 252 281 820 Antisense
GAATCTTTTGAAATGCGGCTGGTCT 559 327 855 Antisense
Sequence Source Affymetrix Proprietary Database