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[189394_at] cytochrome P450

Description K07C6.5 /REP_DB=WormBase Gene ID /WP=CE17176 /TR=O44649 /GB=AAB94248.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_total > 61      4grp_total > 33      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 42.2
(-3)
A 		80.9
(0.7)
P 		95.1
(2)
P 		105.6
(3)
A 		63
B 8.1
(-3)
A 		81.8
(3)
A 		64.7
(1.6)
A 		49.7
(0.4)
A 		74
C 54.5
(-3)
A 		88.1
(-0.2)
A 		103.9
(1.1)
P 		127.5
(3)
A 		73
avr 34.9
(-3) 		83.6
(1.9) 		87.9
(2.4) 		94.3
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 9.2
(-2.8)
A 		6
(-3)
A 		84.5
(1.2)
A 		118.6
(3)
P 		32.2
(-1.6)
A 		36.8
(-1.4)
A 		113
B 52.4
(-0.5)
A 		49.1
(-0.9)
A 		79.9
(3)
A 		62.3
(0.8)
A 		71.8
(2)
M 		32.7
(-3)
A 		47
C 72.1
(0.7)
A 		53.4
(-0.6)
A 		106
(3)
A 		96.5
(2.4)
A 		90.6
(2)
A 		17.2
(-3)
A 		89
avr 44.6
(-1.5) 		36.2
(-2.3) 		90.1
(2.8) 		92.5
(3) 		64.9
(0.4) 		28.9
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 15.4
(-3)
A 		17.6
(-1.6)
P 		24.9
(3)
P 		15.5
(-2.9)
A 		10
B 2.6
(-3)
A 		20.2
(3)
A 		15
(1.2)
A 		10.6
(-0.3)
A 		18
C 18
(-3)
A 		25.3
(-0.6)
A 		36.2
(3)
P 		21.5
(-1.8)
A 		18
avr 12
(-3) 		21
(1) 		25.4
(3) 		15.9
(-1.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.7
(-3)
A 		2.1
(-2.9)
A 		18.4
(0.5)
A 		30.1
(3)
P 		9.7
(-1.3)
A 		9
(-1.5)
A 		28
B 18.2
(-0.9)
A 		16.4
(-1.5)
A 		19.4
(-0.5)
A 		16.5
(-1.5)
A 		29.2
(3)
M 		12.2
(-3)
A 		17
C 26.7
(2.3)
A 		16.3
(-0.3)
A 		27
(2.4)
A 		19.4
(0.5)
A 		29.3
(3)
A 		5.8
(-3)
A 		24
avr 15.5
(-0.2) 		11.6
(-1.9) 		21.6
(2.5) 		22
(2.7) 		22.7
(3) 		9
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14927
Sequence Type Exemplar sequence
Representative Public ID K07C6.5 NCBI
Target Description K07C6.5 /REP_DB=WormBase Gene ID /WP=CE17176 /TR=O44649 /GB=AAB94248.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071691(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071691 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-35A5) (cyp-35A5) mRNA, complete cds. 11/11 None
SNAP00000025766 ENSEMBL cdna:SNAP chromosome:CEL140:V:3936212:3938238:1 11/11 None
GENEFINDER00000025775 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3936209:3938238:1 11/11 None
K07C6.5 ENSEMBL cdna:known chromosome:CEL140:V:3936209:3938238:1 gene:K07C6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3936208-3938238(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-35A5
Ensembl K07C6.5
Entrez Gene 178802 Entrez gene
SwissProt O44649 EMBL-EBI
WormBase CE17176 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94248 Cytochrome p450 family protein 35A5 [Caenorhabditis elegans] ref|NP_504092.1| CYtochrome P450 family member (cyp-35A5) [Caenorhabditis elegans] 0.0
blast AAB52315 Cytochrome p450 family protein 35A2 [Caenorhabditis elegans] ref|NP_504880.2| CYtochrome P450 family member (cyp-35A2) [Caenorhabditis elegans] 0.0
blast CAE58283 Hypothetical protein CBG01390 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-140
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 5.3E-85
Pfam IPR001128 EMBL-EBI Cytochrome P450 5.3E-85
Sequence
Target Sequence 
>C. ELEGANS:189394_AT
atgctctatgacttgtggctgactggtcaagaaaccacgacagtaactttactctgcgga
tttaatcaccttcttgcacatccagaggttatggataaggcaagagaagagctcctgaag
atcacagaaaacagagcccggtctttaagtctttctgatcgtccaacaactccatatctg
aacgcaatgatcggagaaattcaacgtcacgcgtcaattcttaatgtgacattttggaag
atcaataaggaactcacatatatgggtggccatcctgtggactctggagctgtcgttaca
gctcagctcggcgctttgcacgtaaacgatacgattttcaaaaacccgagagagttcgat
ccagaaagatttattcgagatgatacattgcttcaaaaggttatcccattcggagttgga
aagagaaattgcctgggagagtctcttgcaagatcggagctatatttgatacttggaaat
ctacttctccgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCTATGACTTGTGGCTGACTG 611 41 904 Antisense
GTAACTTTACTCTGCGGATTTAATC 576 451 946 Antisense
GATTTAATCACCTTCTTGCACATCC 625 427 962 Antisense
GCCCGGTCTTTAAGTCTTTCTGATC 118 285 1039 Antisense
ATCGTCCAACAACTCCATATCTGAA 651 35 1061 Antisense
AATTCAACGTCACGCGTCAATTCTT 694 175 1101 Antisense
TATATGGGTGGCCATCCTGTGGACT 105 659 1162 Antisense
TGTGGACTCTGGAGCTGTCGTTACA 292 555 1179 Antisense
CTCGGCGCTTTGCACGTAAACGATA 76 229 1210 Antisense
GAAATTGCCTGGGAGAGTCTCTTGC 704 361 1328 Antisense
TACTTGGAAATCTACTTCTCCGATA 175 645 1373 Antisense
Sequence Source Affymetrix Proprietary Database