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[189391_s_at]

Description ZC434.9 /REP_DB=WormBase Gene ID /WP=CE25665 /TR=Q23318 /GB=CAB00065.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=carboxypeptidase
Cluster 6grp_high1_10_10 > 80      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_total > 92      4grp_total > 41      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 144.8
(-3)
P 		373
(3)
P 		330
(1.9)
P 		229
(-0.8)
P 		228
B 139.7
(-3)
P 		336.5
(1.2)
P 		421.9
(3)
P 		314
(0.7)
P 		282
C 147.6
(-3)
P 		315.4
(3)
P 		280.2
(1.7)
P 		309.6
(2.8)
P 		168
avr 144
(-3) 		341.6
(2.9) 		344
(3) 		284.2
(1.2) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 149.5
(-0.5)
P 		214
(1.5)
P 		203.5
(1.1)
P 		158.4
(-0.3)
P 		263.2
(3)
P 		70.4
(-3)
P 		193
B 140.7
(-0.8)
P 		269.9
(3)
P 		192.7
(0.7)
P 		188.2
(0.6)
P 		185.4
(0.5)
P 		68.1
(-3)
P 		202
C 170
(-1.6)
P 		221.5
(0.9)
P 		141.6
(-3)
P 		202
(-0.1)
P 		265.3
(3)
P 		158.3
(-2.2)
M 		124
avr 153.4
(-0.6) 		235.1
(2.9) 		179.3
(0.5) 		182.9
(0.6) 		238
(3) 		98.9
(-3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 52.7
(-0.8)
P 		81
(2.4)
P 		86.3
(3)
P 		33.5
(-3)
P 		53
B 44.6
(-3)
P 		83.1
(1.3)
P 		97.8
(3)
P 		66.9
(-0.5)
P 		53
C 48.9
(-3)
P 		90.7
(2.1)
P 		97.6
(3)
P 		52.2
(-2.6)
P 		49
avr 48.7
(-3) 		84.9
(1.8) 		93.9
(3) 		50.9
(-2.7) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 27.6
(-2)
P 		76.1
(2.7)
P 		44.3
(-0.4)
P 		40.2
(-0.8)
P 		79.4
(3)
P 		17.1
(-3)
P 		62
B 48.9
(-0.8)
P 		89.8
(3)
P 		46.8
(-1)
P 		49.8
(-0.7)
P 		75.3
(1.6)
P 		25.4
(-3)
P 		64
C 63
(0.2)
P 		67.6
(0.8)
P 		36
(-3)
P 		40.6
(-2.4)
P 		85.9
(3)
P 		53
(-1)
M 		50
avr 46.5
(-1.2) 		77.8
(2.7) 		42.4
(-1.7) 		43.5
(-1.5) 		80.2
(3) 		31.8
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189391_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.756
Sequence Type Exemplar sequence
Representative Public ID ZC434.9 NCBI
Target Description ZC434.9 /REP_DB=WormBase Gene ID /WP=CE25665 /TR=Q23318 /GB=CAB00065.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026680(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026680 NCBI Caenorhabditis elegans ZC434.9a (carboxypeptidase) mRNA, complete cds. 11/11 None
ZC434.9a ENSEMBL cdna:known chromosome:CEL140:I:10364433:10368951:1 gene:ZC434.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026681 8/11 Cross Hyb Matching Probes None
ZC434.9b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172908 2 1 NM_001026680 189391_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10364363-10368654(+) 99.43 100.0
Public Domain and Genome References
Ensembl ZC434.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00065 Hypothetical protein ZC434.9a [Caenorhabditis elegans] ref|NP_001021851.1| ZC434.9a [Caenorhabditis elegans] 0.0
blast CAE54930 Hypothetical protein ZC434.9b [Caenorhabditis elegans] ref|NP_001021852.1| ZC434.9b [Caenorhabditis elegans] 0.0
blast CAE73799 Hypothetical protein CBG21349 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.5E-13
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 2.2E-33
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 1.5E-24
Pfam IPR003146 EMBL-EBI Peptidase M14A, carboxypeptidase activation peptide 4.4E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021851.1 1 9-26
ZC434.9a 1 9-26
Sequence
Target Sequence 
>C. ELEGANS:189391_S_AT
cgctgctctggaaaacacatacggaacgaagtacaagtttggcacaggatctgatattct
ttatccatctgctggaggttcggatgattgggcaaagggaactcttcgtatcaaatatgt
atacttgctcgagttaagaccaggagaggatgtttgggatggtttcatccttgaccaaca
tcaacttatcccaaccgcaaaagaaacttggaatggaatcaaagtagtcattagagcagt
tacagaacaagctggatcacgttcatcttcgccacgtgtcctacctgcattcgtgcgccg
tccaaatggtagtattgtaagaacgaatgttcgtcgtccgggctctcgacagttcatccg
ccgacccggaagctttgctcaacagagatcagggcaattcagaaatagaaactcacacag
aagtcaagttgcaaacgtggctcaacgcccagggccaccccaacaagcttctcgtagcgg
cacctgcgcggacagatcgtcatggtgtgcatcttggctcaacgccaactccagagtctg
ccagatctcgcaaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTGCTCTGGAAAACACATACGGA 31 253 1158 Antisense
GGGCAAAGGGAACTCTTCGTATCAA 10 493 1247 Antisense
GATGGTTTCATCCTTGACCAACATC 19 409 1315 Antisense
ATCAACTTATCCCAACCGCAAAAGA 336 21 1337 Antisense
ACAAGCTGGATCACGTTCATCTTCG 409 113 1404 Antisense
TTCGTGCGCCGTCCAAATGGTAGTA 631 647 1447 Antisense
GACCCGGAAGCTTTGCTCAACAGAG 354 381 1520 Antisense
AAGTTGCAAACGTGGCTCAACGCCC 111 155 1583 Antisense
ACCTGCGCGGACAGATCGTCATGGT 139 87 1639 Antisense
GATCGTCATGGTGTGCATCTTGGCT 59 419 1652 Antisense
AGAGTCTGCCAGATCTCGCAAATCT 392 69 1690 Antisense
Sequence Source Affymetrix Proprietary Database