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[189389_at] 7TM chemoreceptor, sri family

Description B0454.10 /REP_DB=WormBase Gene ID /WP=CE25741 /GEN=sri-30 /GB=AAK71871.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 09      4grp_total > 36      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 39.7
(-1.8)
A 		108.4
(3)
A 		21.8
(-3)
A 		46.9
(-1.3)
A 		87
B 91.3
(3)
A 		55.5
(0.4)
A 		9
(-3)
A 		76.3
(1.9)
A 		82
C 47.7
(-2)
A 		85
(3)
A 		41.2
(-2.9)
A 		40.3
(-3)
A 		45
avr 59.6
(0.6) 		83
(3) 		24
(-3) 		54.5
(0.1) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 116.6
(3)
A 		25.8
(-3)
A 		32.1
(-2.6)
A 		62.3
(-0.6)
A 		50.2
(-1.4)
A 		48.1
(-1.5)
A 		91
B 60.3
(1.2)
A 		81.1
(3)
A 		34.7
(-1)
A 		58.5
(1.1)
A 		24.9
(-1.8)
A 		11.1
(-3)
A 		70
C 100.7
(2.8)
A 		49.2
(-0.5)
A 		46.3
(-0.7)
A 		68
(0.7)
A 		103.6
(3)
A 		11.1
(-3)
A 		93
avr 92.5
(3) 		52
(-0.5) 		37.7
(-1.8) 		62.9
(0.4) 		59.6
(0.1) 		23.4
(-3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 14.5
(-0)
A 		23.5
(3)
A 		5.7
(-3)
A 		6.9
(-2.6)
A 		18
B 29.1
(3)
A 		13.7
(-0.4)
A 		2.1
(-3)
A 		16.3
(0.2)
A 		27
C 15.8
(0.1)
A 		24.4
(3)
A 		14.4
(-0.4)
A 		6.8
(-3)
A 		18
avr 19.8
(2.7) 		20.5
(3) 		7.4
(-3) 		10
(-1.8) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 21.5
(3)
A 		9.2
(-2.1)
A 		7
(-3)
A 		15.8
(0.6)
A 		15.1
(0.4)
A 		11.7
(-1.1)
A 		15
B 21
(1.4)
A 		27
(3)
A 		8.4
(-1.9)
A 		15.5
(-0)
A 		10.1
(-1.4)
A 		4.2
(-3)
A 		23
C 37.3
(3)
A 		15
(-1)
A 		11.8
(-1.6)
A 		13.7
(-1.2)
A 		33.5
(2.3)
A 		3.7
(-3)
A 		34
avr 26.6
(3) 		17.1
(0.2) 		9.1
(-2.2) 		15
(-0.5) 		19.6
(0.9) 		6.5
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189389_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5833
Sequence Type Exemplar sequence
Representative Public ID B0454.10 NCBI
Target Description B0454.10 /REP_DB=WormBase Gene ID /WP=CE25741 /GEN=sri-30 /GB=AAK71871.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062031 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-30) (sri-30) mRNA, complete cds. 11/11 None
GENEFINDER00000034459 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3046214:3049569:1 11/11 None
B0454.10 ENSEMBL cdna:known chromosome:CEL140:II:3046214:3048048:1 gene:B0454.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034453 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3046212-3048047(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-30
Ensembl B0454.10
Entrez Gene 191905 Entrez gene
SwissProt Q95X80 EMBL-EBI
WormBase CE25741 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK71871 Serpentine receptor, class i protein 30 [Caenorhabditis elegans] ref|NP_494432.1| Serpentine Receptor, class I family member (sri-30) [Caenorhabditis elegans] 1.0E-177
blast AAK71871 Serpentine receptor, class i protein 30 [Caenorhabditis elegans] ref|NP_494432.1| Serpentine Receptor, class I family member (sri-30) [Caenorhabditis elegans] 1.0E-164
blast AAB70940 Serpentine receptor, class i protein 31 [Caenorhabditis elegans] ref|NP_494434.1| Serpentine Receptor, class I family member (sri-31) [Caenorhabditis elegans] 1.0E-130
blast AAB70940 Serpentine receptor, class i protein 31 [Caenorhabditis elegans] ref|NP_494434.1| Serpentine Receptor, class I family member (sri-31) [Caenorhabditis elegans] 1.0E-123
blast H88087 protein B0454.4 [imported] - Caenorhabditis elegans 1.0E-106
blast AAK71872 Serpentine receptor, class i protein 29 [Caenorhabditis elegans] ref|NP_494431.1| Serpentine Receptor, class I family member (sri-29) [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.2E-72
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.6E-36
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.3E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494432.1 6 15-37,61-83,93-115,135-157,192-214,239-261
B0454.10 6 15-37,61-83,93-115,135-157,192-214,239-261
GENEFINDER00000034459 6 15-37,44-66,76-98,118-140,176-198,221-243
Sequence
Target Sequence 
>C. ELEGANS:189389_AT
caatcaactgacagacttccctacccatttatctacgtcctatgtatgagctactccgta
gctatatctaccgcatgtcatctgatccgaataagcaaggaggaacagtggcagttgatc
cagctgaatcattcatctctgattccgcagtttcaaaggcttcgagaattttctctaggc
tatttgaattatggattaatcgctttctttgtgctaacggcatttggaacatttaagaca
acgattgtgatatctgttttggtatatcggatgtataatgtattatctatggtgcaaggt
caattgtcaaaaactacattggccaggcatagagtagcattgtggagtttgagcatgcag
ttcatgacaaccccgatatccttcctcccggcatttatagtccttgtggtcactttgttc
ccaactgcatactcacaagaaatttgccgttgctcactaatggttgctaccacacattcc
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCAACTGACAGACTTCCCTACC 570 181 388 Antisense
CTACCCATTTATCTACGTCCTATGT 581 223 408 Antisense
GCTACTCCGTAGCTATATCTACCGC 677 301 437 Antisense
ATATCTACCGCATGTCATCTGATCC 173 21 451 Antisense
CATTCATCTCTGATTCCGCAGTTTC 324 215 517 Antisense
ATCGCTTTCTTTGTGCTAACGGCAT 271 37 586 Antisense
CCTCCCGGCATTTATAGTCCTTGTG 2 267 771 Antisense
ATAGTCCTTGTGGTCACTTTGTTCC 709 21 784 Antisense
TTTGTTCCCAACTGCATACTCACAA 169 667 801 Antisense
AATTTGCCGTTGCTCACTAATGGTT 556 171 828 Antisense
TAATGGTTGCTACCACACATTCCAC 262 637 845 Antisense
Sequence Source Affymetrix Proprietary Database