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[189385_s_at] uridylate kinase

Description C29F7.3 /REP_DB=WormBase Gene ID /WP=CE08444 /TR=O17622 /GB=CAB07328.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=uridylate kinase
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 41      6grp_total > 03      4grp_total > 58      6grp_highest_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1210
1 2 3 4 range
A 734.7
(-0.8)
P 		1406
(2.8)
P 		1434.3
(3)
P 		343.5
(-3)
P 		1091
B 704.6
(-0.4)
P 		1063.3
(1.5)
P 		1335.5
(3)
P 		224.4
(-3)
P 		1111
C 672.4
(-0.6)
P 		1272.6
(3)
P 		1175.6
(2.4)
P 		274.3
(-3)
P 		998
avr 703.9
(-0.5) 		1247.3
(2.6) 		1315.1
(3) 		280.7
(-3) 		1034

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 628
1 2 3 4 5 6 range
A 1022.1
(3)
P 		804.6
(0.9)
P 		754.1
(0.4)
P 		609.3
(-0.9)
P 		620.5
(-0.8)
P 		394.2
(-3)
P 		628
B 740
(0.5)
P 		920.2
(3)
P 		698.9
(-0.1)
P 		649.6
(-0.8)
P 		798.7
(1.3)
P 		490
(-3)
P 		430
C 850.7
(2)
P 		900.2
(2.8)
P 		657.8
(-1.4)
P 		910.9
(3)
P 		564.6
(-3)
P 		564.1
(-3)
P 		347
avr 870.9
(2.9) 		875
(3) 		703.6
(0.4) 		723.3
(0.7) 		661.3
(-0.3) 		482.8
(-3) 		392
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 364
1 2 3 4 range
A 267.5
(1)
P 		305.2
(1.7)
P 		375
(3)
P 		50.3
(-3)
P 		325
B 224.7
(1.1)
P 		262.6
(1.9)
P 		309.5
(3)
P 		47.8
(-3)
P 		262
C 222.6
(-0.1)
P 		365.9
(2.3)
P 		409.7
(3)
P 		46.2
(-3)
P 		364
avr 238.3
(0.6) 		311.2
(2) 		364.7
(3) 		48.1
(-3) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 188.4
(-0.1)
P 		286.2
(3)
P 		164.2
(-0.8)
P 		154.5
(-1.2)
P 		187.2
(-0.1)
P 		96
(-3)
P 		190
B 257.5
(0.4)
P 		306.3
(2.3)
P 		169.7
(-3)
P 		172.1
(-2.9)
P 		324.5
(3)
P 		182.7
(-2.5)
P 		155
C 315.3
(3)
P 		274.7
(1.4)
P 		167.4
(-3)
P 		183.2
(-2.4)
P 		182.7
(-2.4)
P 		188.8
(-2.1)
P 		148
avr 253.7
(1.4) 		289.1
(3) 		167.1
(-2.5) 		169.9
(-2.4) 		231.5
(0.4) 		155.8
(-3) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189385_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17564
Sequence Type Exemplar sequence
Representative Public ID C29F7.3 NCBI
Target Description C29F7.3 /REP_DB=WormBase Gene ID /WP=CE08444 /TR=O17622 /GB=CAB07328.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=uridylate kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077835 NCBI Caenorhabditis elegans C29F7.3 (C29F7.3) mRNA, complete cds. 11/11 None
SNAP00000036548 ENSEMBL cdna:SNAP chromosome:CEL140:X:13418951:13419817:-1 11/11 None
GENEFINDER00000036556 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13418951:13419817:-1 11/11 None
C29F7.3 ENSEMBL cdna:known chromosome:CEL140:X:13418784:13419825:-1 gene:C29F7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13418950-13419817(-) 100.0 100.0
Public Domain and Genome References
Gene Title uridylate kinase
Ensembl C29F7.3
Entrez Gene 181464 Entrez gene
SwissProt O17622 EMBL-EBI
WormBase CE08444 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
16776 phosphotransferase activity, phosphate group as acceptor inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07328 Hypothetical protein C29F7.3 [Caenorhabditis elegans] ref|NP_510236.1| C29F7.3 [Caenorhabditis elegans] 1.0E-108
blast CAE61447 Hypothetical protein CBG05336 [Caenorhabditis briggsae] 2.0E-89
blast CAA93264 Hypothetical protein F40F8.1 [Caenorhabditis elegans] ref|NP_496386.1| F40F8.1 [Caenorhabditis elegans] 1.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR000850 EMBL-EBI Adenylate kinase 7.8E-52
Sequence
Target Sequence 
>C. ELEGANS:189385_S_AT
atgtacaacgtcgtctttgttctcggcccaccaggatctggaaaaggaaccatttgcact
caaattcatgagaacctcggctacgtacacttgtcagctggagatttgctcagagctgag
cgtgaaagagcaggaagcgaatatggagcccttatcgaaggtcatatcaaaaatggatcc
attgtgcccgtggaaatcacatgcgctttgctggaaaatgccatgatcgctagcaaagac
gccaacggcttcctcatcgatgggttcccgcgtaacgaagacaattggtcgggatggaac
aagcaaatgggcggaaaggttaatgagcaattcgtgctcttcctttcatgtccagtcgac
gtttgcattgaccggtgccttcatcgtgggcagggaagaaccgatgacaatgtcgagtcc
ttgaaaaaacgcgtagagacctataatcaatcgacgttccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTACAACGTCGTCTTTGTTCTCG 30 49 13 Antisense
CATGAGAACCTCGGCTACGTACACT 514 209 79 Antisense
GGCTACGTACACTTGTCAGCTGGAG 677 537 91 Antisense
GTGCCCGTGGAAATCACATGCGCTT 341 479 196 Antisense
TAGCAAAGACGCCAACGGCTTCCTC 55 653 243 Antisense
TCATCGATGGGTTCCCGCGTAACGA 298 619 266 Antisense
TGAGCAATTCGTGCTCTTCCTTTCA 445 567 336 Antisense
TTCCTTTCATGTCCAGTCGACGTTT 56 691 352 Antisense
AGTCGACGTTTGCATTGACCGGTGC 1 9 366 Antisense
GTGCCTTCATCGTGGGCAGGGAAGA 211 419 387 Antisense
GACCTATAATCAATCGACGTTCCCA 389 369 450 Antisense
Sequence Source Affymetrix Proprietary Database