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[189384_s_at] protein kinase

Description Y73B6A.1 /REP_DB=WormBase Gene ID /WP=CE28269 /TR=Q9N4E6 /GB=AAF36040.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 39      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 47.8
(-3)
A 		57.1
(-1.3)
P 		62.7
(-0.3)
A 		81
(3)
A 		33
B 72.7
(3)
P 		49.5
(0.5)
A 		16.8
(-3)
A 		57.8
(1.4)
P 		56
C 73.2
(1.2)
P 		42.3
(-1.9)
A 		31.2
(-3)
A 		91.9
(3)
P 		61
avr 64.6
(1.2) 		49.6
(-1.1) 		36.9
(-3) 		76.9
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 34.5
(-2)
A 		43.9
(-0.8)
A 		26.3
(-3)
A 		56
(0.7)
A 		74.5
(3)
P 		33.7
(-2.1)
A 		48
B 62.3
(3)
P 		48.4
(-0.4)
M 		37.8
(-3)
A 		49.3
(-0.2)
A 		54.2
(1)
P 		57.2
(1.8)
P 		25
C 45.6
(-0.5)
A 		55
(0.4)
M 		18.6
(-3)
A 		34.2
(-1.5)
A 		49.8
(-0.1)
P 		82.3
(3)
P 		64
avr 47.5
(0.7) 		49.1
(1) 		27.6
(-3) 		46.5
(0.6) 		59.5
(3) 		57.7
(2.7) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 17.4
(3)
A 		12.4
(-2.5)
P 		16.4
(1.9)
A 		11.9
(-3)
A 		6
B 23.2
(3)
P 		12.2
(-0.4)
A 		3.9
(-3)
A 		12.3
(-0.4)
P 		19
C 24.2
(3)
P 		12.2
(-2.4)
A 		10.9
(-3)
A 		15.5
(-0.9)
P 		13
avr 21.6
(3) 		12.3
(-2) 		10.4
(-3) 		13.2
(-1.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 6.4
(-2.8)
A 		15.6
(0.5)
A 		5.7
(-3)
A 		14.2
(0)
A 		22.5
(3)
P 		8.2
(-2.1)
A 		17
B 21.7
(2.9)
P 		16.1
(0.2)
M 		9.2
(-3)
A 		13.1
(-1.2)
A 		22
(3)
P 		21.3
(2.7)
P 		13
C 16.9
(0.2)
A 		16.8
(0.2)
M 		4.7
(-3)
A 		6.9
(-2.4)
A 		16.1
(0)
P 		27.5
(3)
P 		23
avr 15
(0.7) 		16.2
(1.2) 		6.5
(-3) 		11.4
(-0.9) 		20.2
(3) 		19
(2.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189384_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10670
Sequence Type Exemplar sequence
Representative Public ID Y73B6A.1 NCBI
Target Description Y73B6A.1 /REP_DB=WormBase Gene ID /WP=CE28269 /TR=Q9N4E6 /GB=AAF36040.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068629(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068629 NCBI Caenorhabditis elegans Y73B6A.1 (Y73B6A.1) mRNA, complete cds. 11/11 None
SNAP00000010727 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6661220:6663410:-1 11/11 None
GENEFINDER00000010735 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6661220:6663410:-1 11/11 None
Y73B6A.1 ENSEMBL cdna:known chromosome:CEL140:IV:6661218:6668038:-1 gene:Y73B6A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6661225-6664720(-) 75.46 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl Y73B6A.1
Entrez Gene 177434 Entrez gene
SwissProt Q9N4E6 EMBL-EBI
WormBase CE29921 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36040 Hypothetical protein Y73B6A.1 [Caenorhabditis elegans] ref|NP_501030.2| Y73B6A.1 [Caenorhabditis elegans] 0.0
blast NP_490768 Y18H1A.10 [Caenorhabditis elegans] gb|AAK21513.2| Hypothetical protein Y18H1A.10 [Caenorhabditis elegans] 7.0E-18
blast NP_490768 Y18H1A.10 [Caenorhabditis elegans] gb|AAK21513.2| Hypothetical protein Y18H1A.10 [Caenorhabditis elegans] 9.0E-18
blast AAG00045 Hypothetical protein ZK177.2 [Caenorhabditis elegans] ref|NP_495058.1| ZK177.2 [Caenorhabditis elegans] sp|Q09371|YS42_CAEEL Hypothetical protein ZK177.2 in chromosome II 5.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.8E-4
Pfam IPR000719 EMBL-EBI Protein kinase 2.8E-4
Sequence
Target Sequence 
>C. ELEGANS:189384_S_AT
tgaagaaggtcgggtcggctgtttttcgcaagaaaaacccctcgtttcttgaatttttgg
gagcctatttggtcgagggtcactccaaaactgaccccaagctccagttcaaaaacaaga
acggccacccgctcccagaaaaggcccaattcgtggcgatttttatggaattggttgaag
gaggaagatcaatcggcgatttcccatttaaaactgataatgaaaggaaatcattcgttt
gtcaattggttgtcgggctgatgactgcacaaaaagaactcggattttcacatggtgatt
tgtccgtggacaacaccatcgtcacgaaaacgaagttgaggactgtcgcgtacatcctgg
aaggaaaagcagtcaaactgaaaacgtctggagttcttttaaaaattatcgattatggca
aaagtgaatgtagctccgataataaagcgtccaccagctttgaagattcggactacacaa
agctacggaaccatgccatggatgtttttaaagttcccggattgaaggcgctggcagatg
ctgtgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGAAGGTCGGGTCGGCTGTTTT 587 573 1139 Antisense
GAGCCTATTTGGTCGAGGGTCACTC 142 385 1199 Antisense
GAAAAGGCCCAATTCGTGGCGATTT 26 353 1276 Antisense
TCAATCGGCGATTTCCCATTTAAAA 43 631 1327 Antisense
GGTTGTCGGGCTGATGACTGCACAA 491 507 1386 Antisense
TCCGTGGACAACACCATCGTCACGA 547 591 1441 Antisense
AGTTGAGGACTGTCGCGTACATCCT 703 63 1472 Antisense
GCGTCCACCAGCTTTGAAGATTCGG 296 291 1585 Antisense
CAAAGCTACGGAACCATGCCATGGA 493 191 1616 Antisense
AAAGTTCCCGGATTGAAGGCGCTGG 522 121 1648 Antisense
GAAGGCGCTGGCAGATGCTGTGAAC 603 333 1662 Antisense
Sequence Source Affymetrix Proprietary Database