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[189383_at] 7TM chemoreceptor, srg family

Description Y25C1A.11 /REP_DB=WormBase Gene ID /WP=CE21479 /TR=Q9TYL6 /GB=AAD12841.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 18      4grp_total > 09      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.1
(-3)
A 		6.5
(-1.5)
A 		4.9
(-2)
A 		19.6
(3)
A 		18
B 7.1
(1.1)
A 		7.7
(1.5)
A 		1.7
(-3)
A 		9.7
(3)
A 		8
C 7.2
(-1.5)
A 		5.5
(-3)
A 		12.3
(3)
A 		12.3
(3)
A 		7
avr 5.5
(-3) 		6.6
(-2.2) 		6.3
(-2.4) 		13.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 111.9
(3)
A 		29.1
(-1.6)
A 		4.4
(-3)
A 		5.2
(-3)
A 		7.7
(-2.8)
A 		16
(-2.4)
A 		108
B 19.8
(0.1)
A 		3.7
(-3)
A 		16
(-0.6)
A 		7.1
(-2.3)
A 		34.5
(3)
A 		8.8
(-2)
A 		31
C 3.6
(-2.7)
A 		30.8
(3)
A 		3.5
(-2.7)
A 		22.4
(1.2)
A 		2.2
(-3)
A 		8.8
(-1.6)
A 		29
avr 45.1
(3) 		21.2
(-0.9) 		8
(-3) 		11.6
(-2.4) 		14.8
(-1.9) 		11.2
(-2.5) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.8
(-3)
A 		1.4
(-1.3)
A 		1.3
(-1.6)
A 		2.9
(3)
A 		2
B 2.3
(3)
A 		1.9
(1.7)
A 		0.4
(-3)
A 		2.1
(2.4)
A 		2
C 2.4
(-1.2)
A 		1.6
(-3)
A 		4.3
(3)
A 		2.1
(-1.9)
A 		3
avr 1.8
(-1.5) 		1.6
(-3) 		2
(0) 		2.4
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 20.6
(3)
A 		10.4
(-0.1)
A 		1
(-3)
A 		1.3
(-2.9)
A 		2.3
(-2.6)
A 		3.9
(-2.1)
A 		20
B 6.9
(-0.3)
A 		1.2
(-3)
A 		3.9
(-1.7)
A 		1.9
(-2.7)
A 		14
(3)
A 		3.3
(-2)
A 		13
C 1.3
(-2.6)
A 		9.4
(3)
A 		0.9
(-2.9)
A 		4.5
(-0.4)
A 		0.7
(-3)
A 		2.9
(-1.5)
A 		9
avr 9.6
(3) 		7
(1) 		1.9
(-3) 		2.6
(-2.5) 		5.7
(-0) 		3.4
(-1.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189383_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4384
Sequence Type Exemplar sequence
Representative Public ID Y25C1A.11 NCBI
Target Description Y25C1A.11 /REP_DB=WormBase Gene ID /WP=CE21479 /TR=Q9TYL6 /GB=AAD12841.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062043(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062043 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-23) (srg-23) mRNA, complete cds. 11/11 None
Y25C1A.11 ENSEMBL cdna:known chromosome:CEL140:II:3093897:3096155:-1 gene:Y25C1A.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041883 6/11 Cross Hyb Matching Probes None
GENEFINDER00000041894 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3093895-3096173(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-23
Ensembl Y25C1A.11
Entrez Gene 189540 Entrez gene
SwissProt Q9TYL6 EMBL-EBI
WormBase CE36336 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494444 Serpentine Receptor, class G (gamma) family member (srg-23) [Caenorhabditis elegans] gb|AAD12841.2| Serpentine receptor, class g (gamma) protein 23 [Caenorhabditis elegans] 5.0E-90
blast NP_494445 Serpentine Receptor, class G (gamma) family member (srg-24) [Caenorhabditis elegans] gb|AAD12842.2| Serpentine receptor, class g (gamma) protein 24 [Caenorhabditis elegans] 1.0E-77
blast NP_494443 Serpentine Receptor, class G (gamma) family member (srg-22) [Caenorhabditis elegans] gb|AAD12845.2| Serpentine receptor, class g (gamma) protein 22 [Caenorhabditis elegans] 6.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 7.5E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494444.2 4 21-43,68-90,103-125,140-162
Y25C1A.11 4 21-43,68-90,103-125,140-162
Sequence
Target Sequence 
>C. ELEGANS:189383_AT
tttacgccatccataattaccaaagcctattacactgtgaatacctacaacggggcacac
aagactatttctcaaatcattataagtttcaatagaatgacatgtgttgtacttccagtt
agacatgttacgttatggaagaaaatattgaagccggtactgatcctccaatacctgctc
ccactcggtgtaatctggaatatattgatatcaagagtttatataaatccaagtggtgtt
gggttttctgtcaactacaaggcagcgattccatgggccaacgtttctctcctgaaccta
ttccactgtatcccatgtgttgtattagttaccatattctttattgtcactatttatggc
ctaacaatgttggaatatagaatcaaaaatgtagagcgatacctggcaattttcacatta
ataatgggcttgcagactacaatgtatgctgttacgcagatctactttgccttcctcgcc
ccatctatcccaagtatccgcgcaaccatggttttaattgcttttaatatttttgacgtc
atgcatgtctacagccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACGCCATCCATAATTACCAAAG 383 671 331 Antisense
ATTACCAAAGCCTATTACACTGTGA 59 13 346 Antisense
ACACTGTGAATACCTACAACGGGGC 708 109 362 Antisense
AACGGGGCACACAAGACTATTTCTC 54 145 379 Antisense
TATTGAAGCCGGTACTGATCCTCCA 511 665 476 Antisense
TGCTCCCACTCGGTGTAATCTGGAA 695 581 506 Antisense
CTTTATTGTCACTATTTATGGCCTA 48 221 669 Antisense
AGAGCGATACCTGGCAATTTTCACA 574 69 723 Antisense
ATGTATGCTGTTACGCAGATCTACT 79 49 772 Antisense
CAAGTATCCGCGCAACCATGGTTTT 480 183 821 Antisense
TTGACGTCATGCATGTCTACAGCCC 168 705 863 Antisense
Sequence Source Affymetrix Proprietary Database