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[189380_at] F-box domain.

Description F59B2.8 /REP_DB=WormBase Gene ID /WP=CE00235 /TR=SW:P34483 /GB=CAA77589.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=F-box domain.
Cluster 6grp_high1_10_10 > 23      4grp_high_8_8 > 30      6grp_total > 12      4grp_total > 34      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 42.8
(-1.5)
P 		55.1
(3)
P 		38.8
(-3)
A 		53.8
(2.5)
A 		16
B 35.1
(-0.7)
P 		46.1
(3)
P 		28.1
(-3)
A 		29.9
(-2.4)
A 		18
C 30.5
(-3)
A 		62.4
(2.5)
P 		52.7
(0.8)
P 		65.5
(3)
P 		35
avr 36.1
(-3) 		54.5
(3) 		39.9
(-1.8) 		49.7
(1.4) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 71.6
(3)
P 		58.3
(0.9)
P 		46.9
(-0.9)
P 		35.4
(-2.7)
A 		53.6
(0.2)
P 		33.7
(-3)
A 		38
B 64
(0.4)
P 		85
(3)
P 		59.5
(-0.1)
P 		62.6
(0.3)
P 		43
(-2.1)
P 		35.9
(-3)
P 		49
C 58.7
(1)
P 		74.4
(3)
P 		62.8
(1.6)
P 		59.8
(1.2)
P 		60
(1.2)
P 		26.1
(-3)
P 		48
avr 64.8
(1.9) 		72.6
(3) 		56.4
(0.6) 		52.6
(0.1) 		52.2
(-0) 		31.9
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 15.6
(3)
P 		12
(0.2)
P 		10.2
(-1.2)
A 		7.9
(-3)
A 		8
B 11.2
(2.8)
P 		11.4
(3)
P 		6.5
(-2.9)
A 		6.4
(-3)
A 		5
C 10.1
(-3)
A 		17.9
(2.6)
P 		18.4
(3)
P 		11
(-2.3)
P 		8
avr 12.3
(1.3) 		13.8
(3) 		11.7
(0.7) 		8.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.2
(-0.6)
P 		20.7
(3)
P 		10.2
(-2)
P 		9
(-2.6)
A 		16.2
(0.8)
P 		8.2
(-3)
A 		13
B 22.3
(0.6)
P 		28.3
(3)
P 		14.5
(-2.6)
P 		16.6
(-1.7)
P 		17.5
(-1.3)
P 		13.4
(-3)
P 		15
C 21.7
(2.6)
P 		22.7
(3)
P 		16
(0.1)
P 		12
(-1.6)
P 		19.4
(1.6)
P 		8.7
(-3)
P 		14
avr 19.1
(0.9) 		23.9
(3) 		13.6
(-1.5) 		12.5
(-2) 		17.7
(0.3) 		10.1
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6447
Sequence Type Exemplar sequence
Representative Public ID F59B2.8 NCBI
Target Description F59B2.8 /REP_DB=WormBase Gene ID /WP=CE00235 /TR=SW:P34483 /GB=CAA77589.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=F-box domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066593 NCBI Caenorhabditis elegans F59B2.8 (F59B2.8) mRNA, complete cds. 11/11 None
SNAP00000012577 ENSEMBL cdna:SNAP chromosome:CEL140:III:9007880:9010027:-1 11/11 None
GENEFINDER00000012589 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9007880:9009813:-1 11/11 None
F59B2.8 ENSEMBL cdna:known chromosome:CEL140:III:9007880:9010027:-1 gene:F59B2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9007875-9010023(-) 100.0 100.0
Public Domain and Genome References
Gene Title F-box domain.
Ensembl F59B2.8
Entrez Gene 186593 Entrez gene
SwissProt P34483 EMBL-EBI
WormBase CE00235 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA77589 Hypothetical protein F59B2.8 [Caenorhabditis elegans] ref|NP_498994.1| F59B2.8 [Caenorhabditis elegans] sp|P34483|YMJ8_CAEEL Hypothetical protein F59B2.8 in chromosome III 0.0
blast CAA77589 Hypothetical protein F59B2.8 [Caenorhabditis elegans] ref|NP_498994.1| F59B2.8 [Caenorhabditis elegans] sp|P34483|YMJ8_CAEEL Hypothetical protein F59B2.8 in chromosome III 1.0E-124
blast CAA77586 Hypothetical protein F59B2.9 [Caenorhabditis elegans] ref|NP_498995.2| F59B2.9 [Caenorhabditis elegans] sp|P34484|YMJ9_CAEEL Hypothetical protein F59B2.9 in chromosome III 6.0E-94
blast CAE62714 Hypothetical protein CBG06869 [Caenorhabditis briggsae] 6.0E-89
blast CAA77586 Hypothetical protein F59B2.9 [Caenorhabditis elegans] ref|NP_498995.2| F59B2.9 [Caenorhabditis elegans] sp|P34484|YMJ9_CAEEL Hypothetical protein F59B2.9 in chromosome III 5.0E-84
blast CAE62714 Hypothetical protein CBG06869 [Caenorhabditis briggsae] 4.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-6
Sequence
Target Sequence 
>C. ELEGANS:189380_AT
attaacatgttgctccgtggactttcatgagcattatttcggatggaaggatcttactgt
attcgctgaaaactggcttaacaacaaaaactccaaactggaaatggtcagatttggatg
gccaaatgatatcgattctctttctgcaaattttgaaggactaaaaactcataaatggga
tccaaaacaacgagaaaagaagtttttatactcaaaggataatagattgcaccgaataga
ttgtacgaagggattggaattggaaagagatgatggagaattggcaacttggatatatga
accagatccattaacttcatctttatactttctagtttggactgaaagatttccagagaa
aaagagattggaaaaactcccgaaaatgcttgcaccatattatgaacaattggttcaatt
gagaaaagaatatgatgattcttgtaatttagaatggcttctttcaaatccaaatctaaa
acttgacgaatttgtggaaacttatagaattctacgtggaatggattcagaggttagact
ctcttctattggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAACATGTTGCTCCGTGGACTTT 334 11 705 Antisense
TCCGTGGACTTTCATGAGCATTATT 387 581 718 Antisense
TTCGCTGAAAACTGGCTTAACAACA 469 557 766 Antisense
GGCCAAATGATATCGATTCTCTTTC 22 545 824 Antisense
ATCGATTCTCTTTCTGCAAATTTTG 48 37 835 Antisense
GATTGCACCGAATAGATTGTACGAA 432 433 929 Antisense
GAACCAGATCCATTAACTTCATCTT 706 345 1003 Antisense
ACTTCATCTTTATACTTTCTAGTTT 561 103 1018 Antisense
AAACTCCCGAAAATGCTTGCACCAT 523 127 1078 Antisense
GAATGGCTTCTTTCAAATCCAAATC 415 333 1156 Antisense
GAGGTTAGACTCTCTTCTATTGGAA 647 401 1234 Antisense
Sequence Source Affymetrix Proprietary Database