[Home] | [Total List]

[189377_s_at]

Description H14N18.4 /REP_DB=WormBase Gene ID /WP=CE17976 /TR=O61978 /GB=AAC17783.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transpeptidase
Cluster 6grp_high1_10_10 > 76      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_total > 67      4grp_total > 10      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 435
1 2 3 4 range
A 150.3
(-3)
P 		163.8
(-2.6)
P 		155.2
(-2.9)
P 		367.6
(3)
P 		217
B 102.7
(-3)
P 		136.5
(-2.5)
P 		151.8
(-2.3)
P 		527.5
(3)
P 		425
C 105.7
(-2.7)
P 		187
(-0.8)
P 		92.8
(-3)
P 		350.2
(3)
P 		257
avr 119.6
(-3) 		162.4
(-2.1) 		133.3
(-2.7) 		415.1
(3) 		296

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 60.2
(-3)
P 		126
(-0.1)
P 		85.6
(-1.9)
P 		69.4
(-2.6)
P 		102.6
(-1.1)
P 		195.2
(3)
P 		135
B 128.6
(1)
P 		120.1
(0.3)
P 		82
(-3)
P 		130.8
(1.2)
P 		83.9
(-2.8)
P 		151.8
(3)
P 		70
C 87.7
(-1.9)
P 		97.4
(-1.3)
P 		99.4
(-1.2)
P 		70.6
(-3)
M 		102.9
(-0.9)
P 		164.6
(3)
P 		94
avr 92.2
(-2.8) 		114.5
(-1.1) 		89
(-3) 		90.3
(-2.9) 		96.5
(-2.4) 		170.5
(3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 54.7
(3)
P 		35.6
(-3)
P 		40.6
(-1.4)
P 		53.8
(2.7)
P 		19
B 32.7
(-3)
P 		33.7
(-2.9)
P 		35.2
(-2.8)
P 		112.4
(3)
P 		80
C 35
(-2.4)
P 		53.8
(1.8)
P 		32.3
(-3)
P 		59.1
(3)
P 		27
avr 40.8
(-2.3) 		41
(-2.2) 		36
(-3) 		75.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 11.1
(-3)
P 		44.8
(2.6)
P 		18.6
(-1.8)
P 		17.6
(-1.9)
P 		31
(0.3)
P 		47.5
(3)
P 		36
B 44.8
(1.1)
P 		40
(0.3)
P 		19.9
(-3)
P 		34.6
(-0.6)
P 		34.1
(-0.7)
P 		56.6
(3)
P 		37
C 32.5
(-0.3)
P 		29.7
(-0.7)
P 		25.3
(-1.4)
P 		14.2
(-3)
M 		33.3
(-0.2)
P 		55.1
(3)
P 		41
avr 29.5
(-1.5) 		38.2
(0.2) 		21.3
(-3) 		22.1
(-2.8) 		32.8
(-0.8) 		53.1
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189377_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11436
Sequence Type Exemplar sequence
Representative Public ID H14N18.4 NCBI
Target Description H14N18.4 /REP_DB=WormBase Gene ID /WP=CE17976 /TR=O61978 /GB=AAC17783.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transpeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171497(11), NM_171496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171497 NCBI Caenorhabditis elegans H14N18.4b (transpeptidase) mRNA, complete cds. 11/11 None
NM_171496 NCBI Caenorhabditis elegans H14N18.4a (transpeptidase) mRNA, complete cds. 11/11 None
SNAP00000023336 ENSEMBL cdna:SNAP chromosome:CEL140:V:8927164:8930224:-1 11/11 None
GENEFINDER00000023340 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8927164:8931325:-1 10/11 None
H14N18.4b ENSEMBL cdna:known chromosome:CEL140:V:8926487:8930440:-1 gene:H14N18.4 11/11 None
H14N18.4a ENSEMBL cdna:known chromosome:CEL140:V:8927164:8931525:-1 gene:H14N18.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8927164-8931526(-) 100.0 100.0
Public Domain and Genome References
Ensembl H14N18.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM45352 Hypothetical protein H14N18.4b [Caenorhabditis elegans] ref|NP_741582.1| H14N18.4b [Caenorhabditis elegans] 0.0
blast AAC17783 Hypothetical protein H14N18.4a [Caenorhabditis elegans] ref|NP_741581.1| H14N18.4a [Caenorhabditis elegans] 0.0
blast CAE72049 Hypothetical protein CBG19133 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 1.0E-126
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 1.0E-126
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 1.0E-126
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741582.1 1 13-35
NP_741581.1 1 44-66
H14N18.4b 1 13-35
H14N18.4a 1 44-66
SNAP00000023336 1 13-35
GENEFINDER00000023340 1 31-53
Sequence
Target Sequence 
>C. ELEGANS:189377_S_AT
tggcaccagatcatggaacctctcatgtttccatcattgactctcatggaaatgcagtat
cctgtacatcaactgttaatcaaattcttggatcaatgcgtgcctcacctactttgggta
ttgtctggaacgatcaaatggatgatttctcaacacctggaatgaagaattcattcggtt
acgctccatccgaaaccaacttcattcaacctggaaaacggccaatgagctcaatgagtc
caatgattatctataacaagaatgagaatagagtggaaatggtaaccggagcatctggag
gatcatatattatctcagcaactgcccaaacagttattcggactcttcttttcaatcaaa
ctgttaaagcagcagttgatgctccaagattccataatcaatatcttccagaaacaacag
aaactgaagaagcaatgccactagcgttgagagaagtactcgttgagcaatacaagcaaa
acttcacagttgtcccgcggcaaaagtctgtcgttcaagctctcatttctcttgaaggat
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCACCAGATCATGGAACCTCTCA 236 545 1316 Antisense
ACCTCTCATGTTTCCATCATTGACT 507 87 1333 Antisense
TGCCTCACCTACTTTGGGTATTGTC 230 585 1416 Antisense
TTCGGTTACGCTCCATCCGAAACCA 695 693 1489 Antisense
TCCGAAACCAACTTCATTCAACCTG 619 593 1504 Antisense
ATTATCTCAGCAACTGCCCAAACAG 177 13 1624 Antisense
GTTATTCGGACTCTTCTTTTCAATC 242 447 1648 Antisense
AGCAGTTGATGCTCCAAGATTCCAT 396 75 1686 Antisense
ACAGTTGTCCCGCGGCAAAAGTCTG 26 105 1801 Antisense
AAAAGTCTGTCGTTCAAGCTCTCAT 103 133 1817 Antisense
AAGCTCTCATTTCTCTTGAAGGATT 25 151 1832 Antisense
Sequence Source Affymetrix Proprietary Database