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[189376_s_at] carboxylesterase

Description ZC376.1 /REP_DB=WormBase Gene ID /WP=CE15193 /TR=Q23268 /GB=CAB00880.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster 6grp_total > 34      4grp_total > 17      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 79.1
(-3)
P 		140
(-1.3)
A 		133
(-1.5)
A 		291.2
(3)
P 		212
B 133.6
(-3)
A 		159.2
(1.2)
A 		156
(0.7)
A 		170
(3)
P 		36
C 163.4
(-2)
P 		191.1
(-0.7)
M 		141.9
(-3)
A 		272.5
(3)
P 		131
avr 125.4
(-3) 		163.4
(-1.1) 		143.6
(-2.1) 		244.6
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 119.6
(1.6)
A 		115.3
(1.3)
A 		136.8
(3)
A 		106.2
(0.5)
P 		62.7
(-3)
A 		127.2
(2.2)
A 		74
B 166
(3)
A 		137.9
(0.6)
A 		165.7
(3)
A 		142.8
(1.1)
M 		94.9
(-2.9)
A 		94.3
(-3)
A 		72
C 135.9
(-0.5)
A 		203.8
(3)
A 		167
(1.1)
A 		107.4
(-2)
A 		101.7
(-2.3)
A 		88.2
(-3)
P 		116
avr 140.5
(1.6) 		152.3
(2.6) 		156.5
(3) 		118.8
(-0.2) 		86.4
(-3) 		103.2
(-1.6) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 28.8
(-3)
P 		30.4
(-2.3)
A 		34.8
(-0.4)
A 		42.6
(3)
P 		14
B 42.6
(3)
A 		39.3
(-0)
A 		36.1
(-3)
A 		36.2
(-2.9)
P 		7
C 54.1
(2.5)
P 		54.9
(3)
M 		49.5
(-0.6)
A 		45.9
(-3)
P 		9
avr 41.8
(3) 		41.5
(1.9) 		40.1
(-3) 		41.6
(2.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 22
(-2.2)
A 		41
(3)
A 		29.8
(-0)
A 		26.9
(-0.8)
P 		18.9
(-3)
A 		31
(0.3)
A 		22
B 57.8
(3)
A 		45.9
(-0.2)
A 		40.2
(-1.7)
A 		37.8
(-2.3)
M 		38.6
(-2.1)
A 		35.2
(-3)
A 		23
C 50.4
(1.3)
A 		62.2
(3)
A 		42.5
(0.1)
A 		21.6
(-3)
A 		32.9
(-1.3)
A 		29.5
(-1.8)
P 		41
avr 43.4
(1.2) 		49.7
(3) 		37.5
(-0.5) 		28.8
(-3) 		30.1
(-2.6) 		31.9
(-2.1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189376_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14311
Sequence Type Exemplar sequence
Representative Public ID ZC376.1 NCBI
Target Description ZC376.1 /REP_DB=WormBase Gene ID /WP=CE15193 /TR=Q23268 /GB=CAB00880.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074109 NCBI Caenorhabditis elegans ZC376.1 (carboxylesterase) mRNA, complete cds. 11/11 None
SNAP00000015355 ENSEMBL cdna:SNAP chromosome:CEL140:V:14174291:14179939:-1 11/11 None
GENEFINDER00000015365 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14174291:14179939:-1 11/11 None
ZC376.1 ENSEMBL cdna:known chromosome:CEL140:V:14178105:14185548:-1 gene:ZC376.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14178179-14185518(-) 100.0 100.0
Public Domain and Genome References
Gene Title carboxylesterase
Ensembl ZC376.1
Entrez Gene 179918 Entrez gene
SwissProt Q23268 EMBL-EBI
WormBase CE15193 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00880 Hypothetical protein ZC376.1 [Caenorhabditis elegans] ref|NP_506510.1| ZC376.1 [Caenorhabditis elegans] 0.0
blast CAB00884 Hypothetical protein ZC376.2 [Caenorhabditis elegans] ref|NP_506509.3| ZC376.2 [Caenorhabditis elegans] 0.0
blast CAB03277 Hypothetical protein ZC376.3 [Caenorhabditis elegans] emb|CAB00887.1| Hypothetical protein ZC376.3 [Caenorhabditis elegans] ref|NP_506508.1| ZC376.3 [Caenorhabditis elegans] 0.0
blast CAE61007 Hypothetical protein CBG04745 [Caenorhabditis briggsae] 0.0
blast CAB03273 Hypothetical protein T02B5.3 [Caenorhabditis elegans] ref|NP_506504.1| T02B5.3 [Caenorhabditis elegans] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 9.7E-79
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 7.6E-36
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 7.7E-57
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-124
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 4.7E-124
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506510.1 1 572-594
ZC376.1 1 572-594
SNAP00000015355 1 1090-1112
GENEFINDER00000015365 1 1124-1146
Sequence
Target Sequence 
>C. ELEGANS:189376_S_AT
gtcgtggaccatttgttgccaaggattacgttattgagcgaatttatagtggaatgcttg
ccaattttatcaatttcgaagatccttctccatcgaaaactcagcagtggcgacagtaca
cacaggagaaacgcgaatattttttgatagattttgataagaacttcactatgcctggaa
tgaaagatcactattacacaagggctctagatttttggagtaccgccggcaaaaagtcat
tcagtgaacgattttcgccgtcacttgacaattttgtcatgtcaattctcacagatccaa
ttgtttcccatttgaaaggtgttgcatctggccctgataagtctattgaacaatttgaaa
aggtttttaacgaacgggagagcttccttgaagagttgaagctaaggagaaaattgaagt
tggagaagaaaatcggtgttcaaatgagaaattcagttgtggaatttgaaaaagatgcag
atcaagggacaagtggaggagttctaaatacacttccaataattcttggtgtcacagtat
ttggtagtatcatctatgcttccatatcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGTGGACCATTTGTTGCCAAGGA 186 473 1214 Antisense
AAGATCCTTCTCCATCGAAAACTCA 611 153 1292 Antisense
GAAAACTCAGCAGTGGCGACAGTAC 162 353 1308 Antisense
CTAGATTTTTGGAGTACCGCCGGCA 74 225 1420 Antisense
GTACCGCCGGCAAAAAGTCATTCAG 522 457 1433 Antisense
CGATTTTCGCCGTCACTTGACAATT 141 247 1462 Antisense
TGTCATGTCAATTCTCACAGATCCA 111 559 1488 Antisense
CACAGATCCAATTGTTTCCCATTTG 461 195 1503 Antisense
TGTTGCATCTGGCCCTGATAAGTCT 310 561 1533 Antisense
AACGAACGGGAGAGCTTCCTTGAAG 96 137 1582 Antisense
TATCATCTATGCTTCCATATCCCAT 53 661 1761 Antisense
Sequence Source Affymetrix Proprietary Database