[Home] | [Total List]

[189375_at] F-box domain.

Description F59B2.9 /REP_DB=WormBase Gene ID /WP=CE00236 /TR=SW:P34484 /GB=CAA77586.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=F-box domain.
Cluster 6grp_high1_10_10 > 92      6grp_total > 94      4grp_total > 0      6grp_high1_sub > 04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 43
(-0.9)
A 		16.2
(-3)
A 		34.9
(-1.5)
A 		91.9
(3)
P 		76
B 18.1
(-3)
A 		21.4
(-2.5)
A 		30
(-1.4)
A 		61.6
(3)
P 		44
C 36.7
(2)
P 		2.7
(-3)
A 		29.4
(0.9)
A 		43.8
(3)
A 		41
avr 32.6
(-0.8) 		13.4
(-3) 		31.4
(-0.9) 		65.8
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 66.2
(3)
A 		31.7
(-3)
P 		54.7
(1)
P 		49.9
(0.2)
P 		57.9
(1.6)
P 		57.7
(1.5)
P 		35
B 47.1
(-1.4)
P 		47
(-1.4)
P 		53.2
(-0.1)
P 		39.5
(-3)
M 		68
(3)
P 		56.5
(0.6)
P 		29
C 35.3
(-3)
A 		60.2
(3)
P 		38.5
(-2.2)
A 		57.9
(2.4)
P 		44.3
(-0.8)
P 		39.2
(-2.1)
P 		25
avr 49.5
(-1.2) 		46.3
(-3) 		48.8
(-1.6) 		49.1
(-1.4) 		56.7
(3) 		51.1
(-0.2) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.7
(3)
A 		3.5
(-3)
A 		9.1
(-0.2)
A 		13.5
(1.9)
P 		12
B 5.8
(-2.6)
A 		5.3
(-3)
A 		7
(-1.7)
A 		13.1
(3)
P 		8
C 12.1
(3)
P 		0.8
(-3)
A 		10.3
(2)
A 		7.4
(0.5)
A 		11
avr 11.2
(2.9) 		3.2
(-3) 		8.8
(1.1) 		11.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 12.2
(-2.1)
A 		11.3
(-3)
P 		11.9
(-2.4)
P 		12.7
(-1.6)
P 		17.5
(3)
P 		14.1
(-0.3)
P 		6
B 16.4
(-0.9)
P 		15.7
(-1.2)
P 		12.9
(-2.2)
P 		10.5
(-3)
M 		27.6
(3)
P 		21.1
(0.7)
P 		17
C 13.1
(-0.7)
A 		18.4
(3)
P 		9.8
(-3)
A 		11.6
(-1.7)
P 		14.3
(0.1)
P 		13.1
(-0.7)
P 		9
avr 13.9
(-1.3) 		15.1
(-0.4) 		11.5
(-3) 		11.6
(-2.9) 		19.8
(3) 		16.1
(0.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189375_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6549
Sequence Type Exemplar sequence
Representative Public ID F59B2.9 NCBI
Target Description F59B2.9 /REP_DB=WormBase Gene ID /WP=CE00236 /TR=SW:P34484 /GB=CAA77586.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=F-box domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066594(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066594 NCBI Caenorhabditis elegans F59B2.9 (F59B2.9) mRNA, complete cds. 11/11 None
SNAP00000012578 ENSEMBL cdna:SNAP chromosome:CEL140:III:9010650:9012221:-1 11/11 None
GENEFINDER00000012588 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9010650:9012058:-1 11/11 None
F59B2.9 ENSEMBL cdna:known chromosome:CEL140:III:9010650:9012221:-1 gene:F59B2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9010645-9012217(-) 100.0 100.0
Public Domain and Genome References
Gene Title F-box domain.
Ensembl F59B2.9
Entrez Gene 186594 Entrez gene
SwissProt P34484 EMBL-EBI
WormBase CE33287 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA77586 Hypothetical protein F59B2.9 [Caenorhabditis elegans] ref|NP_498995.2| F59B2.9 [Caenorhabditis elegans] sp|P34484|YMJ9_CAEEL Hypothetical protein F59B2.9 in chromosome III 0.0
blast CAA77589 Hypothetical protein F59B2.8 [Caenorhabditis elegans] ref|NP_498994.1| F59B2.8 [Caenorhabditis elegans] sp|P34483|YMJ8_CAEEL Hypothetical protein F59B2.8 in chromosome III 1.0E-102
blast CAE62715 Hypothetical protein CBG06870 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.3E-8
Sequence
Target Sequence 
>C. ELEGANS:189375_AT
catctcttggaactgaactgcatcgtagctgatctaagtgatcataatttccagtgctcg
gattttgaagcatttgcagaaaagtggatgaataacaagtcttcaaaggttgaaaatctt
cgttttcaatggcaatctgatgttgaatttaaacttgaaaatcttaaaacaagccgatgg
gatagtactagaagagagcgaaattacattttcacaatgaaaaatgaatcagttcaaatt
gattgttccgatggttttgagttggaaagaaatgatggaaggcttgcaacatttgtagtt
gaacaacaagaagatagaactcatattttgtactttctcgtttggatagaactgtttcct
gagaagaaaagactggaaaatctaccaaaaacgcttggacctttgtacaaacagctcgaa
aagataaatcgtgattatccagatgaatcatcattggaaagacttttatcgaatcctaat
ctggtgtatacagagtttttggaaacttataaagtactgaaaaatatggatggagagaac
agatcaccatctactggacaagcttttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTCTTGGAACTGAACTGCATCG 206 213 748 Antisense
GAACTGCATCGTAGCTGATCTAAGT 409 349 762 Antisense
AGTGATCATAATTTCCAGTGCTCGG 57 61 784 Antisense
ATTTCCAGTGCTCGGATTTTGAAGC 67 17 794 Antisense
TGGAAGGCTTGCAACATTTGTAGTT 290 547 1023 Antisense
ACTCATATTTTGTACTTTCTCGTTT 352 101 1066 Antisense
GTTTGGATAGAACTGTTTCCTGAGA 634 451 1087 Antisense
AACGCTTGGACCTTTGTACAAACAG 689 143 1137 Antisense
GACTTTTATCGAATCCTAATCTGGT 118 373 1208 Antisense
GGAGAGAACAGATCACCATCTACTG 621 517 1279 Antisense
ACCATCTACTGGACAAGCTTTTCGA 149 85 1293 Antisense
Sequence Source Affymetrix Proprietary Database