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[189372_s_at] dehydrogenase

Description Y32H12A.3 /REP_DB=WormBase Gene ID /WP=CE21514 /TR=Q9N538 /GB=AAF60486.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 30      4grp_high_8_8 > 07      6grp_highest_nonorm > 46      6grp_total > 55      4grp_total > 01      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3240
1 2 3 4 range
A 1902.3
(-1.7)
P 		1340.8
(-3)
P 		1992.7
(-1.5)
P 		4013.9
(3)
P 		2673
B 2465.1
(-1)
P 		1400.7
(-3)
P 		1956.1
(-1.9)
P 		4538.4
(3)
P 		3138
C 2216.5
(-1.3)
P 		1298.6
(-3)
P 		1947.5
(-1.8)
P 		4502.5
(3)
P 		3204
avr 2194.6
(-1.3) 		1346.7
(-3) 		1965.4
(-1.8) 		4351.6
(3) 		3005

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2389
1 2 3 4 5 6 range
A 3360.8
(1)
P 		2338.1
(-1.8)
P 		4093.4
(3)
P 		2759.2
(-0.7)
P 		1907.4
(-3)
P 		3117.6
(0.3)
P 		2186
B 2888.8
(0.6)
P 		2514.1
(-1)
P 		3303.9
(2.3)
P 		2853.9
(0.4)
P 		2040.7
(-3)
P 		3459.4
(3)
P 		1419
C 2924.9
(1.2)
P 		2515.8
(-0.2)
P 		3393
(2.8)
P 		2765
(0.6)
P 		1704.8
(-3)
P 		3455.5
(3)
P 		1751
avr 3058.2
(1.1) 		2456
(-1) 		3596.8
(3) 		2792.7
(0.2) 		1884.3
(-3) 		3344.2
(2.1) 		1713
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 676
1 2 3 4 range
A 692.6
(3)
P 		291.1
(-3)
P 		520.9
(0.4)
P 		587.6
(1.4)
P 		402
B 786.1
(1.3)
P 		345.9
(-3)
P 		453.3
(-2)
P 		967.1
(3)
P 		621
C 733.7
(2.6)
P 		373.4
(-3)
P 		678.8
(1.7)
P 		759.2
(3)
P 		386
avr 737.5
(2.5) 		336.8
(-3) 		551
(-0) 		771.3
(3) 		435

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 738
1 2 3 4 5 6 range
A 619.5
(-2.2)
P 		831.5
(1.9)
P 		891.5
(3)
P 		699.8
(-0.6)
P 		575.6
(-3)
P 		759
(0.5)
P 		316
B 1005.2
(-0.2)
P 		836.8
(-2.1)
P 		802.3
(-2.5)
P 		755.9
(-3)
P 		829.1
(-2.2)
P 		1290
(3)
P 		534
C 1084.1
(2.3)
P 		767.6
(-0.9)
P 		863.6
(0.1)
P 		556
(-3)
P 		551.6
(-3)
P 		1156.8
(3)
P 		605
avr 902.9
(0.6) 		812
(-0.7) 		852.5
(-0.1) 		670.6
(-2.7) 		652.1
(-3) 		1068.6
(3) 		417
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189372_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7550
Sequence Type Exemplar sequence
Representative Public ID Y32H12A.3 NCBI
Target Description Y32H12A.3 /REP_DB=WormBase Gene ID /WP=CE21514 /TR=Q9N538 /GB=AAF60486.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065745(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065745 NCBI Caenorhabditis elegans Y32H12A.3 (dehydrogenase) mRNA, complete cds. 11/11 None
GENEFINDER00000037250 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5364536:5367996:-1 11/11 None
Y32H12A.3.1 ENSEMBL cdna:known chromosome:CEL140:III:5364477:5368001:-1 gene:Y32H12A.3 11/11 None
Y32H12A.3.2 ENSEMBL cdna:known chromosome:CEL140:III:5364536:5368002:-1 gene:Y32H12A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037240 8/11 Cross Hyb Matching Probes None
SNAP00000037241 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5364534-5367995(-) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Gene Symbol dhs-9
Ensembl Y32H12A.3
Entrez Gene 175737 Entrez gene
SwissProt Q9N538 EMBL-EBI
WormBase CE21514 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.3084.1.A1_A_AT similar to dehydrogenase/reductase (SDR family) member 1 cfa
CANINE_2:CFAAFFX.18958.1.S1_S_AT similar to dehydrogenase/reductase (SDR family) member 1 cfa
HG-U133_PLUS_2:213279_AT dehydrogenase/reductase (SDR family) member 1 hs
HG-U133A_2:213279_AT dehydrogenase/reductase (SDR family) member 1 hs
HG-U133A:213279_AT dehydrogenase/reductase (SDR family) member 1 hs
HG-U95AV2:39104_AT dehydrogenase/reductase (SDR family) member 1 hs
HU35KSUBC:RC_AA430666_AT dehydrogenase/reductase (SDR family) member 1 hs
U133_X3P:HS.308467.0.S1_3P_AT dehydrogenase/reductase (SDR family) member 1 hs
HG-U95AV2:39103_S_AT dehydrogenase/reductase (SDR family) member 1 hs
HG-U133_PLUS_2:236470_AT Dehydrogenase/reductase (SDR family) member 1 hs
HG-U133B:236470_AT Dehydrogenase/reductase (SDR family) member 1 hs
HG-U95E:73558_AT Dehydrogenase/reductase (SDR family) member 1 hs
U133_X3P:HS.116996.0.A1_3P_AT Dehydrogenase/reductase (SDR family) member 1 hs
MU11KSUBA:AA688564_S_AT dehydrogenase/reductase (SDR family) member 1 mm
MG-U74AV2:93843_AT dehydrogenase/reductase (SDR family) member 1 mm
MOE430A:1415677_AT dehydrogenase/reductase (SDR family) member 1 mm
MOE430B:1415677_AT dehydrogenase/reductase (SDR family) member 1 mm
MOUSE430A_2:1415677_AT dehydrogenase/reductase (SDR family) member 1 mm
MOUSE430_2:1415677_AT dehydrogenase/reductase (SDR family) member 1 mm
MG-U74CV2:169800_I_AT Dehydrogenase/reductase (SDR family) member 1, mRNA (cDNA clone MGC:7305 IMAGE:3485584) mm
RG-U34B:RC_AI030907_F_AT dehydrogenase/reductase (SDR family) member 1 rn
RG-U34B:RC_AA943645_F_AT dehydrogenase/reductase (SDR family) member 1 rn
RAE230A:1389407_AT dehydrogenase/reductase (SDR family) member 1 rn
RAT230_2:1389407_AT dehydrogenase/reductase (SDR family) member 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60486 Dehydrogenases, short chain protein 9 [Caenorhabditis elegans] ref|NP_498146.1| Y32H12A.3 [Caenorhabditis elegans] 1.0E-174
blast CAE61327 Hypothetical protein CBG05165 [Caenorhabditis briggsae] 1.0E-165
blast AAG24139 Hypothetical protein F59E11.2 [Caenorhabditis elegans] ref|NP_505327.2| F59E11.2 [Caenorhabditis elegans] 4.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 3.9E-30
Sequence
Target Sequence 
>C. ELEGANS:189372_S_AT
actatttctgcacggtttacgccgcccgtcttatgactgcccgtaacaagggactcattg
tgaatgttagctcgggaggtggccttcgttatctcttcaacgtggcatacggagtcggaa
agcaagcgttggacagaatgtcggcggatacagctgtcgaattgagaaaaaagaacgttt
gcgttgtctcaatctggcctggagccgttcgtaccgagcttgtcgacaaaatgttcaagg
atgaaaacggaaaaccacgtcctgaaatcaaaaatgccgaggtttttgcaaacggagaaa
cagtcgagtatccgggaagagcagtcgtctctctggcatcagatccacgtagaatggaca
aaaccggcagaattctgatcactgaggatcttggaaaagaatacggattcgttgatatcg
acggactacggccaccaaatctccgatcagtcagcttcattcttaagcatctcggttgga
ataccactgctaatttcgtaccaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTATTTCTGCACGGTTTACGCCGC 21 103 416 Antisense
GCCTTCGTTATCTCTTCAACGTGGC 39 283 497 Antisense
GAATGTCGGCGGATACAGCTGTCGA 36 333 551 Antisense
TCAATCTGGCCTGGAGCCGTTCGTA 338 633 604 Antisense
CGTTCGTACCGAGCTTGTCGACAAA 142 245 621 Antisense
TCCGGGAAGAGCAGTCGTCTCTCTG 131 595 726 Antisense
TCTCTCTGGCATCAGATCCACGTAG 661 611 743 Antisense
GTTGATATCGACGGACTACGGCCAC 89 439 826 Antisense
CAAATCTCCGATCAGTCAGCTTCAT 530 193 851 Antisense
GCATCTCGGTTGGAATACCACTGCT 90 309 882 Antisense
ACCACTGCTAATTTCGTACCAACTT 451 85 898 Antisense
Sequence Source Affymetrix Proprietary Database