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[189371_s_at] adenosine kinase

Description R07H5.8 /REP_DB=WormBase Gene ID /WP=CE12564 /TR=Q93934 /GB=CAB03230.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=adenosine kinase
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 15      6grp_total > 24      4grp_total > 32      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6435
1 2 3 4 range
A 6529.3
(-3)
P 		11617.2
(1.8)
P 		12471.1
(2.6)
P 		12852
(3)
P 		6323
B 6941.8
(-3)
P 		10846.6
(0.9)
P 		12964.2
(3)
P 		11326.7
(1.4)
P 		6022
C 6761.4
(-3)
P 		10002.9
(1.8)
P 		10822.2
(3)
P 		10728.2
(2.9)
P 		4061
avr 6744.2
(-3) 		10822.2
(1.6) 		12085.8
(3) 		11635.6
(2.5) 		5342

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3726
1 2 3 4 5 6 range
A 6847
(2.3)
P 		7227.4
(3)
P 		5203.3
(-0.9)
P 		4594.9
(-2.1)
P 		4117.9
(-3)
P 		4921.1
(-1.5)
P 		3110
B 5024.2
(0.8)
P 		5844.2
(3)
P 		4739.8
(0.1)
P 		4524.1
(-0.5)
P 		3582.8
(-3)
P 		3714.9
(-2.6)
P 		2261
C 6876.7
(3)
P 		5205.9
(0)
P 		6628.2
(2.6)
P 		3501.4
(-3)
P 		5656.9
(0.8)
P 		3798
(-2.5)
P 		3375
avr 6249.3
(3) 		6092.5
(2.6) 		5523.8
(0.9) 		4206.8
(-2.8) 		4452.5
(-2.1) 		4144.7
(-3) 		2105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1963
1 2 3 4 range
A 2377.3
(-0.8)
P 		2521.8
(-0.2)
P 		3260.2
(3)
P 		1881.3
(-3)
P 		1379
B 2213.7
(-3)
P 		2678.9
(0.5)
P 		3004.1
(3)
P 		2413.7
(-1.5)
P 		790
C 2238.2
(-1.7)
P 		2875.9
(0.3)
P 		3771.9
(3)
P 		1808.9
(-3)
P 		1963
avr 2276.4
(-1.9) 		2692.2
(0) 		3345.4
(3) 		2034.6
(-3) 		1311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1866
1 2 3 4 5 6 range
A 1262.2
(-2.5)
P 		2570.4
(3)
P 		1133.2
(-3)
P 		1165.4
(-2.9)
P 		1242.6
(-2.5)
P 		1198.1
(-2.7)
P 		1437
B 1748.2
(1.5)
P 		1945.3
(3)
P 		1151
(-3)
P 		1198.3
(-2.6)
P 		1455.6
(-0.7)
P 		1385.3
(-1.2)
P 		794
C 2548.9
(3)
P 		1588.5
(-0.1)
P 		1687
(0.2)
P 		704.1
(-3)
P 		1830.5
(0.7)
P 		1271.4
(-1.2)
P 		1845
avr 1853.1
(1.9) 		2034.7
(3) 		1323.7
(-1.2) 		1022.6
(-3) 		1509.6
(-0.1) 		1284.9
(-1.4) 		1012
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189371_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10215
Sequence Type Exemplar sequence
Representative Public ID R07H5.8 NCBI
Target Description R07H5.8 /REP_DB=WormBase Gene ID /WP=CE12564 /TR=Q93934 /GB=CAB03230.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=adenosine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069703(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069703 NCBI Caenorhabditis elegans R07H5.8 (R07H5.8) mRNA, complete cds. 11/11 None
SNAP00000030267 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11209501:11210775:-1 11/11 None
GENEFINDER00000030274 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11209501:11211031:-1 11/11 None
R07H5.8.5 ENSEMBL cdna:known chromosome:CEL140:IV:11209277:11211225:-1 gene:R07H5.8 11/11 None
R07H5.8.3 ENSEMBL cdna:known chromosome:CEL140:IV:11209277:11210804:-1 gene:R07H5.8 11/11 None
R07H5.8.4 ENSEMBL cdna:known chromosome:CEL140:IV:11209277:11210804:-1 gene:R07H5.8 11/11 None
R07H5.8.2 ENSEMBL cdna:known chromosome:CEL140:IV:11209277:11210802:-1 gene:R07H5.8 11/11 None
R07H5.8.1 ENSEMBL cdna:known chromosome:CEL140:IV:11209277:11211225:-1 gene:R07H5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11209506-11210781(-) 100.0 100.0
Public Domain and Genome References
Gene Title adenosine kinase
Ensembl R07H5.8
Entrez Gene 178028 Entrez gene
SwissProt Q93934 EMBL-EBI
WormBase CE12564 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258658_AT adenosine kinase 1 (ADK1) / adenosine 5'-phosphotransferase 1 at
CANINE:1587842_AT similar to adenosine kinase cfa
CANINE_2:CFA.19041.1.S1_AT similar to adenosine kinase cfa
CANINE_2:CFAAFFX.23577.1.S1_S_AT similar to adenosine kinase cfa
DROSOPHILA_2:1623695_A_AT dm
DROSGENOME1:152613_AT dm
CHICKEN:GGAAFFX.11478.1.S1_S_AT adenosine kinase gga
HG-U95AV2:168_AT adenosine kinase hs
HC-G110:168_AT adenosine kinase hs
HG-U133_PLUS_2:204120_S_AT adenosine kinase hs
HG-U133A:204120_S_AT adenosine kinase hs
HG-FOCUS:204120_S_AT adenosine kinase hs
HG-U133A_2:204120_S_AT adenosine kinase hs
HG-U133_PLUS_2:204119_S_AT adenosine kinase hs
HG-U133A:204119_S_AT adenosine kinase hs
HG-U133A_2:204119_S_AT adenosine kinase hs
HU35KSUBA:U50196_AT adenosine kinase hs
HUGENEFL:U50196_AT adenosine kinase hs
HU35KSUBC:RC_R12402_S_AT adenosine kinase hs
HUGENEFL:U33936_S_AT adenosine kinase hs
U133_X3P:G1906010_3P_A_AT adenosine kinase hs
HG-U95AV2:38301_AT adenosine kinase hs
HU35KSUBD:RC_R87639_AT Adenosine kinase hs
U133_X3P:HS2.405181.1.S1_3P_AT Adenosine kinase hs
U133_X3P:1569921_3P_AT Adenosine kinase hs
HG-U133_PLUS_2:1569921_AT Adenosine kinase hs
HG-U133_PLUS_2:239501_AT Adenosine kinase hs
HG-U133B:239501_AT Adenosine kinase hs
HG-U133_PLUS_2:239940_AT Adenosine kinase hs
HG-U133B:239940_AT Adenosine kinase hs
HG-U95B:44449_R_AT Adenosine kinase hs
HG-U95B:47668_AT Adenosine kinase hs
HG-U95C:54012_R_AT Adenosine kinase hs
HG-U95E:68777_AT Adenosine kinase hs
HG-U95E:74861_AT Adenosine kinase hs
HU35KSUBB:RC_T08188_AT Adenosine kinase hs
HU35KSUBC:RC_H94605_AT Adenosine kinase hs
U133_X3P:HS.132903.0.A1_3P_AT Adenosine kinase hs
U133_X3P:HS.246819.0.A1_3P_AT Adenosine kinase hs
MOE430A:1438292_X_AT adenosine kinase mm
MOUSE430A_2:1438292_X_AT adenosine kinase mm
MOUSE430_2:1438292_X_AT adenosine kinase mm
MOE430A:1449641_AT adenosine kinase mm
MOUSE430A_2:1449641_AT adenosine kinase mm
MOUSE430_2:1449641_AT adenosine kinase mm
MOUSE430_2:1446068_AT adenosine kinase mm
MOE430B:1446068_AT adenosine kinase mm
MU11KSUBA:AA396040_AT adenosine kinase mm
MU11KSUBA:AA592692_AT adenosine kinase mm
MG-U74AV2:93512_F_AT adenosine kinase mm
MG-U74AV2:97690_AT adenosine kinase mm
MG-U74BV2:164798_I_AT adenosine kinase mm
MOE430A:1416319_AT adenosine kinase mm
MOUSE430A_2:1416319_AT adenosine kinase mm
MOUSE430_2:1416319_AT adenosine kinase mm
MOE430A:1421767_AT Adenosine kinase (Adk), mRNA mm
MOUSE430_2:1421767_AT Adenosine kinase (Adk), mRNA mm
MOUSE430A_2:1421767_AT Adenosine kinase (Adk), mRNA mm
MU11KSUBA:U26589_S_AT Adenosine kinase (Adk), mRNA mm
MG-U74AV2:101647_AT Adenosine kinase (Adk), mRNA mm
MOE430B:1456960_AT Adenosine kinase (Adk), mRNA mm
MOUSE430_2:1456960_AT Adenosine kinase (Adk), mRNA mm
MOE430B:1442615_AT Adenosine kinase (Adk), mRNA mm
MOUSE430_2:1442615_AT Adenosine kinase (Adk), mRNA mm
MOE430B:1445402_AT Adenosine kinase (Adk), mRNA mm
MOUSE430_2:1445402_AT Adenosine kinase (Adk), mRNA mm
MG-U74CV2:136560_AT Adenosine kinase (Adk), mRNA mm
MOE430B:1446675_AT Adenosine kinase (Adk), mRNA mm
MOUSE430_2:1446675_AT Adenosine kinase (Adk), mRNA mm
MOE430B:1459645_AT Adenosine kinase (Adk), mRNA mm
MOUSE430_2:1459645_AT Adenosine kinase (Adk), mRNA mm
MG-U74CV2:168755_AT Adenosine kinase (Adk), mRNA mm
MU19KSUBB:TC34038_AT Adenosine kinase (Adk), mRNA mm
MU19KSUBB:TC34039_AT Adenosine kinase (Adk), mRNA mm
RG-U34A:U57042_S_AT adenosine kinase rn
RG-U34C:RC_AI233602_AT adenosine kinase rn
RAE230A:1369629_AT adenosine kinase rn
RAT230_2:1369629_AT adenosine kinase rn
RAE230A:1369630_AT adenosine kinase rn
RAT230_2:1369630_AT adenosine kinase rn
RAE230B:1380877_AT Adenosine kinase rn
RAT230_2:1380877_AT Adenosine kinase rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6166 purine ribonucleoside salvage inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4001 adenosine kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03230 Hypothetical protein R07H5.8 [Caenorhabditis elegans] ref|NP_502104.1| R07H5.8 [Caenorhabditis elegans] 0.0
blast CAE62022 Hypothetical protein CBG06032 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002173 EMBL-EBI Carbohydrate kinase, PfkB 1.0E-79
Pfam IPR002173 EMBL-EBI Carbohydrate kinase, PfkB 1.0E-79
Sequence
Target Sequence 
>C. ELEGANS:189371_S_AT
aacaccttcactcaagatcatctccagaaggaggagaatcagaagatcatcgagcaggcc
aaatatttctatgtcactggattcttcatcactgtctgcccaccagctattctccaactc
gcaagccactctgccgaattcaacaagactttcacccttaacctctccgccccgttcatc
tcccaatttttcttcgataagctctcggaaatcattccattggtcgatgttcttttcgga
aacgaagacgaagctgctgcctttgctaaagccaatggatgggagaccacctgtgtcaag
gagatcgctttgaaggctgctgcacttccaaagaaatctactaagccaagactcgttgtt
ttcactcaaggaccagagccagtcatcgtcgtggaaggagataaggtcaccgaattccca
gtaactcgtcttccaaaggaagaaatcgtcgataccaacggtgccggagacgcttttgtc
ggaggtttcctttctcaattcatccaaggaaagggagtcgaagcttcagtcacctgtgga
tcttatgctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACCTTCACTCAAGATCATCTCC 3 137 433 Antisense
TCAACAAGACTTTCACCCTTAACCT 215 627 572 Antisense
TTCATCTCCCAATTTTTCTTCGATA 438 689 607 Antisense
ACGAAGACGAAGCTGCTGCCTTTGC 100 93 674 Antisense
GGAGATCGCTTTGAAGGCTGCTGCA 228 519 732 Antisense
GACTCGTTGTTTTCACTCAAGGACC 163 375 782 Antisense
ACCAGAGCCAGTCATCGTCGTGGAA 21 83 804 Antisense
GTCACCGAATTCCCAGTAACTCGTC 32 465 838 Antisense
GAGACGCTTTTGTCGGAGGTTTCCT 610 393 899 Antisense
AGGGAGTCGAAGCTTCAGTCACCTG 245 57 944 Antisense
AGTCACCTGTGGATCTTATGCTGCT 625 61 960 Antisense
Sequence Source Affymetrix Proprietary Database