[Home] | [Total List]

[189369_at] EGF-like domains

Description T01D3.1 /REP_DB=WormBase Gene ID /WP=CE12954 /TR=O01335 /GB=CAB03261.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=EGF-like domains
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 25      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 60      6grp_total > 25      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 582
1 2 3 4 range
A 611.6
(3)
P 		294.8
(-1.5)
P 		193.3
(-3)
P 		305.2
(-1.4)
P 		418
B 756.8
(3)
P 		284
(-1.9)
P 		174.8
(-3)
P 		322.9
(-1.5)
P 		582
C 599.1
(3)
P 		292.2
(-1.7)
P 		206.3
(-3)
P 		245
(-2.4)
P 		393
avr 655.8
(3) 		290.3
(-1.7) 		191.5
(-3) 		291
(-1.7) 		464

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 592.5
(3)
P 		486
(1.5)
P 		226.4
(-2.2)
P 		240
(-2)
P 		252.2
(-1.8)
P 		171.1
(-3)
P 		421
B 531.9
(3)
P 		514.4
(2.7)
P 		317.4
(-0.5)
P 		277.1
(-1.2)
P 		166.4
(-3)
P 		183.6
(-2.7)
P 		366
C 430.3
(1.2)
P 		548.1
(3)
P 		329.9
(-0.3)
P 		297
(-0.7)
P 		145.8
(-3)
P 		267.8
(-1.2)
P 		402
avr 518.2
(3) 		516.2
(3) 		291.2
(-1.1) 		271.4
(-1.5) 		188.1
(-3) 		207.5
(-2.6) 		330
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 222.7
(3)
P 		64
(-2.3)
P 		50.5
(-2.8)
P 		44.7
(-3)
P 		178
B 241.3
(3)
P 		70.2
(-2.1)
P 		40.5
(-3)
P 		68.8
(-2.2)
P 		201
C 198.3
(3)
P 		84
(-1.4)
P 		71.9
(-1.8)
P 		41.3
(-3)
P 		157
avr 220.8
(3) 		72.7
(-2.3) 		54.3
(-2.9) 		51.6
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 109.2
(0.1)
P 		172.9
(3)
P 		49.3
(-2.6)
P 		60.9
(-2.1)
P 		76.1
(-1.4)
P 		41.6
(-3)
P 		131
B 185.1
(3)
P 		171.2
(2.3)
P 		77.1
(-2.5)
P 		73.4
(-2.7)
P 		67.6
(-3)
P 		68.5
(-3)
P 		118
C 159.5
(2.6)
P 		167.2
(3)
P 		84
(-1.2)
P 		59.7
(-2.4)
P 		47.2
(-3)
P 		89.7
(-0.9)
P 		120
avr 151.3
(1.9) 		170.4
(3) 		70.1
(-2.6) 		64.7
(-2.9) 		63.6
(-3) 		66.6
(-2.8) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189369_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13897
Sequence Type Exemplar sequence
Representative Public ID T01D3.1 NCBI
Target Description T01D3.1 /REP_DB=WormBase Gene ID /WP=CE12954 /TR=O01335 /GB=CAB03261.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=EGF-like domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073987 NCBI Caenorhabditis elegans T01D3.1 (T01D3.1) mRNA, complete cds. 11/11 None
SNAP00000036019 ENSEMBL cdna:SNAP chromosome:CEL140:V:13695324:13705834:1 11/11 None
GENEFINDER00000036032 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13695324:13705834:1 11/11 None
T01D3.1 ENSEMBL cdna:known chromosome:CEL140:V:13692483:13705917:1 gene:T01D3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13692564-13705834(+) 100.0 100.0
Public Domain and Genome References
Gene Title EGF-like domains
Ensembl T01D3.1
Entrez Gene 179859 Entrez gene
SwissProt O01335 EMBL-EBI
WormBase CE12954 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03261 Hypothetical protein T01D3.1 [Caenorhabditis elegans] emb|CAB03155.1| Hypothetical protein T01D3.1 [Caenorhabditis elegans] ref|NP_506388.1| T01D3.1 [Caenorhabditis elegans] 0.0
blast CAE66262 Hypothetical protein CBG11506 [Caenorhabditis briggsae] 0.0
blast CAC09416 teneurin-2 [Gallus gallus] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 2.0E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.1E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.0E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.1E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.0E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.1E-4
Sequence
Target Sequence 
>C. ELEGANS:189369_AT
atcaacttttgaatcttccgcgttcccaacacccgatgggtttactttagagccaatcac
aacaactatgactactgaatacccagacggaacaactatgacttctccagatgctactct
tccgattctcacgacaacatcaagtgaatattatacatcaacacaggaatcaatagcttc
ttcaacttctgaagtaacaatcattcttccaacagattccaccacgtttttgacacctcc
gcctagcacaaccacggagcttatttacacagtatcttctgatggaacactggagcccat
aacatctgctccaacaacaataggctcatcatcggaaggaccaacaacagcaacatctac
tgagcccatttacactgccagcccggacacttctcctgaaacagaagcaacaattgggcc
accaattcggatatctacagttggaggtggagatacatatgttacatcaactcctggaca
aggatctacagttaccactcagagtccaatagatgatactgatctggagtgtgcttcaac
cactgccgcgttatctgcatattcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAACTTTTGAATCTTCCGCGTTC 401 27 8961 Antisense
ACTATGACTTCTCCAGATGCTACTC 63 101 9055 Antisense
CTTCCGATTCTCACGACAACATCAA 359 219 9079 Antisense
AACAGATTCCACCACGTTTTTGACA 325 135 9171 Antisense
CACAACCACGGAGCTTATTTACACA 502 191 9207 Antisense
ATAGGCTCATCATCGGAAGGACCAA 555 21 9280 Antisense
GCAACATCTACTGAGCCCATTTACA 508 319 9310 Antisense
TGGGCCACCAATTCGGATATCTACA 186 555 9375 Antisense
GATCTACAGTTACCACTCAGAGTCC 232 419 9443 Antisense
TCTGGAGTGTGCTTCAACCACTGCC 531 607 9483 Antisense
ACTGCCGCGTTATCTGCATATTCGA 119 99 9502 Antisense
Sequence Source Affymetrix Proprietary Database