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[189367_at] 7TM chemoreceptor, sri family

Description ZC239.19 /REP_DB=WormBase Gene ID /WP=CE26331 /GEN=sri-50 /GB=AAK71419.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 12      4grp_total > 17      6grp_cgc > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 14.6
(-3)
A 		31
(-1.9)
A 		21.7
(-2.5)
A 		102.7
(3)
P 		88
B 34.3
(0.4)
A 		51.2
(3)
A 		33.9
(0.3)
A 		12.6
(-3)
A 		39
C 22.3
(-3)
A 		22.5
(-3)
A 		33.9
(-1.8)
A 		81.7
(3)
A 		59
avr 23.7
(-3) 		34.9
(-1.4) 		29.8
(-2.1) 		65.7
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 34.9
(1.4)
A 		45.6
(3)
A 		30.1
(0.7)
A 		5.7
(-3)
A 		43.2
(2.6)
A 		6.4
(-2.9)
A 		40
B 4.9
(-2.7)
A 		30
(3)
A 		10.8
(-1.4)
A 		3.7
(-3)
A 		21.9
(1.2)
A 		4.9
(-2.7)
A 		26
C 50
(3)
A 		46.1
(2.4)
A 		49.4
(2.9)
A 		34.9
(0.7)
A 		12.6
(-2.8)
A 		11.3
(-3)
A 		39
avr 29.9
(1.1) 		40.6
(3) 		30.1
(1.1) 		14.8
(-1.7) 		25.9
(0.3) 		7.5
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.3
(-3)
A 		6.7
(-2.1)
A 		5.7
(-2.8)
A 		15
(3)
P 		10
B 10.9
(2)
A 		12.6
(3)
A 		7.9
(0.2)
A 		2.7
(-3)
A 		10
C 7.4
(-2.3)
A 		6.5
(-3)
A 		11.8
(1.4)
A 		13.8
(3)
A 		7
avr 7.9
(-3) 		8.6
(-1.4) 		8.5
(-1.6) 		10.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.4
(-1)
A 		16.2
(3)
A 		6.5
(-1)
A 		1.5
(-3)
A 		13
(1.7)
A 		1.5
(-3)
A 		15
B 1.7
(-2.5)
A 		10
(3)
A 		2.6
(-1.9)
A 		1
(-3)
A 		8.9
(2.3)
A 		1.8
(-2.5)
A 		9
C 18.5
(3)
A 		14.1
(1.2)
A 		12.6
(0.6)
A 		7
(-1.7)
A 		4.1
(-2.9)
A 		3.8
(-3)
A 		15
avr 8.9
(0.5) 		13.4
(3) 		7.2
(-0.4) 		3.2
(-2.6) 		8.7
(0.4) 		2.4
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4253
Sequence Type Exemplar sequence
Representative Public ID ZC239.19 NCBI
Target Description ZC239.19 /REP_DB=WormBase Gene ID /WP=CE26331 /GEN=sri-50 /GB=AAK71419.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062071(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062071 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-50) (sri-50) mRNA, complete cds. 10/11 None
ZC239.19 ENSEMBL cdna:known chromosome:CEL140:II:3203710:3205538:1 gene:ZC239.19 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024289 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3203708-3205717(+) 90.92 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-50
Ensembl ZC239.19
Entrez Gene 191920 Entrez gene
SwissProt Q95Q38 EMBL-EBI
WormBase CE32764 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK71419 Serpentine receptor, class i protein 50 [Caenorhabditis elegans] ref|NP_494472.2| Serpentine Receptor, class I family member (sri-50) [Caenorhabditis elegans] 1.0E-174
blast T32071 hypothetical protein F22E5.14 - Caenorhabditis elegans 9.0E-83
blast AAB37948 Serpentine receptor, class i protein 51 [Caenorhabditis elegans] ref|NP_494469.1| Serpentine Receptor, class I family member (sri-51) [Caenorhabditis elegans] 5.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.8E-70
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494472.2 7 15-37,59-81,91-113,133-155,189-211,240-262,272-294
ZC239.19 7 15-37,59-81,91-113,133-155,189-211,240-262,272-294
Sequence
Target Sequence 
>C. ELEGANS:189367_AT
tttgttgtacttacatacccccaatacatatccgagttctcgaagcttaacaattttgca
atttaccaatggagcttctggttcatattttcgggaattgtcgcgacattcggaattgtc
ttatattgcattatatgcaattttgcaacttatgacatgcttttaatgctcaaagaggtt
cagctcaaagtttcaaatcaaaattacaaacgccacaggtcagttttaacgacacttatt
gctcagtcgttgggctcttcagtaattgtggtgccgggcttcgctttaatggtttttggc
ctactcgagctcggatatgatcaactaatatgtgaaataatttgcatggtgttttccctt
cgtggttcaattcattcgatagtttttgtgctgactactcctccctatcggagatttatt
tttggtagccaaaaattttcaattccggaaataaaccggtttggcgatttgccgaatatt
ttatgttctggcagtttgccggtttgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTTGTACTTACATACCCCCAAT 211 665 502 Antisense
CCCCAATACATATCCGAGTTCTCGA 630 261 520 Antisense
AGCTTCTGGTTCATATTTTCGGGAA 605 77 574 Antisense
TTCGGGAATTGTCGCGACATTCGGA 325 691 591 Antisense
GAGGTTCAGCTCAAAGTTTCAAATC 380 401 676 Antisense
CAGTCGTTGGGCTCTTCAGTAATTG 259 207 745 Antisense
AGTAATTGTGGTGCCGGGCTTCGCT 163 11 762 Antisense
GCTTCGCTTTAATGGTTTTTGGCCT 381 223 779 Antisense
AATTTGCATGGTGTTTTCCCTTCGT 89 173 840 Antisense
TTCCCTTCGTGGTTCAATTCATTCG 121 697 855 Antisense
GTTCTGGCAGTTTGCCGGTTTGTCG 274 443 986 Antisense
Sequence Source Affymetrix Proprietary Database