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[189365_s_at]

Description R11A8.7A /REP_DB=WormBase Gene ID /WP=CE06305 /TR=Q21920 /GB=CAA94370.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ankyrin repeats
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 28      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 27      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 370
1 2 3 4 range
A 601.9
(3)
P 		298.1
(-3)
P 		312.8
(-2.7)
P 		354.3
(-1.9)
P 		304
B 543
(3)
P 		361.7
(-3)
P 		383.7
(-2.3)
P 		373.2
(-2.6)
P 		181
C 667.6
(3)
P 		520.1
(0.4)
P 		387.2
(-2)
P 		328.7
(-3)
P 		339
avr 604.2
(3) 		393.3
(-2) 		361.2
(-2.8) 		352.1
(-3) 		252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 954
1 2 3 4 5 6 range
A 548.3
(1.5)
P 		620.1
(2.4)
P 		207.8
(-3)
P 		332.4
(-1.4)
P 		384.6
(-0.7)
P 		666.5
(3)
P 		459
B 500.6
(3)
P 		426.4
(1)
P 		357
(-1)
P 		354.6
(-1)
P 		282.5
(-3)
P 		396
(0.1)
P 		218
C 1161.4
(3)
P 		398.4
(-2.5)
P 		523.7
(-1.6)
P 		337.1
(-3)
P 		452.4
(-2.2)
P 		336.2
(-3)
P 		825
avr 736.8
(3) 		481.6
(-0.9) 		362.8
(-2.7) 		341.4
(-3) 		373.2
(-2.5) 		466.2
(-1.1) 		395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 219.1
(3)
P 		64.7
(-2.5)
P 		81.8
(-1.9)
P 		51.9
(-3)
P 		167
B 173.1
(3)
P 		89.3
(-2.4)
P 		88.9
(-2.4)
P 		79.5
(-3)
P 		94
C 221
(3)
P 		149.5
(0.4)
P 		134.9
(-0.1)
P 		55.4
(-3)
P 		166
avr 204.4
(3) 		101.2
(-1.4) 		101.9
(-1.3) 		62.3
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 101.1
(-1.1)
P 		220.5
(3)
P 		45.3
(-3)
P 		84.3
(-1.7)
P 		116.1
(-0.6)
P 		162.3
(1)
P 		175
B 174.2
(3)
P 		141.9
(0.8)
P 		86.7
(-3)
P 		93.9
(-2.5)
P 		114.8
(-1.1)
P 		147.7
(1.2)
P 		88
C 430.5
(3)
P 		121.6
(-2.1)
P 		133.3
(-1.9)
P 		67.8
(-3)
P 		146.4
(-1.7)
P 		112.5
(-2.3)
P 		363
avr 235.3
(3) 		161.3
(0.1) 		88.4
(-2.7) 		82
(-3) 		125.8
(-1.3) 		140.8
(-0.7) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189365_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9543
Sequence Type Exemplar sequence
Representative Public ID R11A8.7A NCBI
Target Description R11A8.7A /REP_DB=WormBase Gene ID /WP=CE06305 /TR=Q21920 /GB=CAA94370.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ankyrin repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069515(11), NM_069514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069515 NCBI Caenorhabditis elegans R11A8.7b (R11A8.7) mRNA, complete cds. 11/11 None
NM_069514 NCBI Caenorhabditis elegans R11A8.7a (R11A8.7) mRNA, complete cds. 11/11 None
SNAP00000020327 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10381631:10386714:1 11/11 None
GENEFINDER00000020345 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10381490:10386714:1 11/11 None
R11A8.7b ENSEMBL cdna:known chromosome:CEL140:IV:10374960:10387268:1 gene:R11A8.7 11/11 None
R11A8.7a ENSEMBL cdna:known chromosome:CEL140:IV:10374960:10386714:1 gene:R11A8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10374965-10386720(+) 97.23 100.0
Public Domain and Genome References
Ensembl R11A8.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94615 Hypothetical protein R11A8.7a [Caenorhabditis elegans] emb|CAA94370.1| Hypothetical protein R11A8.7a [Caenorhabditis elegans] ref|NP_501915.1| R11A8.7a [Caenorhabditis elegans] 0.0
blast CAB54289 Hypothetical protein R11A8.7b [Caenorhabditis elegans] emb|CAB54294.1| Hypothetical protein R11A8.7b [Caenorhabditis elegans] ref|NP_501916.1| R11A8.7b [Caenorhabditis elegans] 0.0
blast CAE56868 Hypothetical protein CBG24701 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 5.4E-13
Pfam IPR002110 EMBL-EBI Ankyrin 8.4E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.018
Pfam IPR002110 EMBL-EBI Ankyrin 38.0
Pfam IPR002110 EMBL-EBI Ankyrin 8.6E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.0037
Pfam IPR002110 EMBL-EBI Ankyrin 8.1E-5
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-6
Pfam IPR002110 EMBL-EBI Ankyrin 7.4
Pfam IPR002110 EMBL-EBI Ankyrin 3.2
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-7
Pfam IPR002110 EMBL-EBI Ankyrin 2.8
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-8
Pfam IPR002110 EMBL-EBI Ankyrin 2.0E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-6
Pfam IPR002110 EMBL-EBI Ankyrin 3.2E-6
Pfam IPR002110 EMBL-EBI Ankyrin 4.8E-8
Pfam IPR002110 EMBL-EBI Ankyrin 6.7E-7
Pfam IPR002110 EMBL-EBI Ankyrin 8.4E-5
Pfam IPR002110 EMBL-EBI Ankyrin 8.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 8.5E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.8
Pfam IPR004087 EMBL-EBI KH 5.4E-13
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-8
Pfam IPR002110 EMBL-EBI Ankyrin 2.0E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-6
Pfam IPR002110 EMBL-EBI Ankyrin 3.2E-6
Pfam IPR002110 EMBL-EBI Ankyrin 4.8E-8
Pfam IPR002110 EMBL-EBI Ankyrin 6.7E-7
Pfam IPR002110 EMBL-EBI Ankyrin 8.4E-5
Pfam IPR002110 EMBL-EBI Ankyrin 8.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 8.5E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.8
Pfam IPR004087 EMBL-EBI KH 5.4E-13
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-8
Pfam IPR002110 EMBL-EBI Ankyrin 2.0E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-6
Pfam IPR002110 EMBL-EBI Ankyrin 3.2E-6
Pfam IPR002110 EMBL-EBI Ankyrin 4.8E-8
Pfam IPR002110 EMBL-EBI Ankyrin 6.7E-7
Pfam IPR002110 EMBL-EBI Ankyrin 8.4E-5
Pfam IPR002110 EMBL-EBI Ankyrin 8.5E-4
Pfam IPR002110 EMBL-EBI Ankyrin 8.5E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.8
Sequence
Target Sequence 
>C. ELEGANS:189365_S_AT
caatctgtataaccatcttgccgcccaattattgactcatcaagagagttctacaggagc
acctggtccaacaagtagtcaacttgcaaatagctactatccatcaccttcgtatacgga
tgccagtgttttagggcaaattagcatgccgtcattgtcacagagaggaataaagcaatt
tgatggatttaataatgactctgatggcgttattgctgctattctcgagcaacaacaaca
acagaagaaacaaggactcgcacaacaatcgttcatgcataactctcaacagccacagcc
gttcggagctcccagcaacgcttctgcaaatcaatcgcgactcggaatgatccaacctcg
gccccaaccgccaccatttgttgctccacaagctccacctggattctcttctcttggaaa
tgcatcttccacgacgaacccatctcgaacttctatgcagcaaatgtatcagcaatacgg
acagagttcacagcaacagccttacggtcagatgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCTGTATAACCATCTTGCCGCC 694 181 7215 Antisense
CTTGCCGCCCAATTATTGACTCATC 83 219 7231 Antisense
GCACCTGGTCCAACAAGTAGTCAAC 219 313 7273 Antisense
ACTATCCATCACCTTCGTATACGGA 530 101 7310 Antisense
ATTAGCATGCCGTCATTGTCACAGA 525 13 7354 Antisense
GACTCTGATGGCGTTATTGCTGCTA 525 373 7411 Antisense
GGACTCGCACAACAATCGTTCATGC 295 525 7468 Antisense
ATGCATAACTCTCAACAGCCACAGC 421 43 7489 Antisense
GCTTCTGCAAATCAATCGCGACTCG 12 307 7534 Antisense
CCCATCTCGAACTTCTATGCAGCAA 327 259 7653 Antisense
GCAACAGCCTTACGGTCAGATGCCT 531 319 7707 Antisense
Sequence Source Affymetrix Proprietary Database