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[189359_s_at] Ras-like protein

Description ZK669.5 /REP_DB=WormBase Gene ID /WP=CE01116 /TR=Q23572 /GB=CAA85466.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Ras-like protein
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 56      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 83      6grp_total > 47      4grp_total > 19      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 411
1 2 3 4 range
A 394.3
(-1.5)
P 		546.6
(2.1)
P 		328.4
(-3)
P 		583.5
(3)
P 		255
B 364.1
(-2.5)
P 		400.7
(-1.4)
P 		348.9
(-3)
P 		537.6
(3)
P 		189
C 409.3
(-2.7)
P 		391.7
(-3)
P 		433.7
(-2.3)
P 		739.7
(3)
P 		348
avr 389.2
(-2.5) 		446.3
(-1.2) 		370.3
(-3) 		620.3
(3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 434
1 2 3 4 5 6 range
A 540
(3)
P 		448.7
(0.7)
P 		535.1
(2.9)
P 		297.5
(-3)
P 		396
(-0.6)
P 		434.3
(0.4)
P 		243
B 477.4
(-1.3)
P 		460
(-1.6)
P 		394.8
(-2.8)
P 		410.6
(-2.5)
P 		380.3
(-3)
P 		731.1
(3)
P 		351
C 408.3
(-1.8)
P 		493.4
(1)
P 		371.2
(-3)
P 		553.7
(3)
P 		394.1
(-2.2)
P 		445.9
(-0.5)
P 		183
avr 475.2
(0.5) 		467.4
(0.2) 		433.7
(-1.2) 		420.6
(-1.8) 		390.1
(-3) 		537.1
(3) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 143.6
(3)
P 		118.7
(0.4)
P 		85.8
(-3)
P 		85.4
(-3)
P 		58
B 116.1
(3)
P 		99
(0.1)
P 		80.9
(-3)
P 		114.6
(2.7)
P 		35
C 135.5
(0.6)
P 		112.6
(-3)
P 		151.2
(3)
P 		124.7
(-1.1)
P 		39
avr 131.7
(3) 		110.1
(-2) 		106
(-3) 		108.2
(-2.5) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 99.5
(-1.3)
P 		159.6
(3)
P 		116.5
(-0.1)
P 		75.4
(-3)
P 		119.5
(0.1)
P 		105.7
(-0.8)
P 		84
B 166.1
(-0.6)
P 		153.1
(-1.1)
P 		95.9
(-3)
P 		108.7
(-2.6)
P 		154.5
(-1)
P 		272.6
(3)
P 		177
C 151.3
(3)
P 		150.5
(2.9)
P 		94.5
(-3)
P 		111.3
(-1.2)
P 		127.5
(0.5)
P 		149.3
(2.8)
P 		57
avr 139
(0.1) 		154.4
(1.3) 		102.3
(-2.7) 		98.5
(-3) 		133.8
(-0.3) 		175.9
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189359_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4680
Sequence Type Exemplar sequence
Representative Public ID ZK669.5 NCBI
Target Description ZK669.5 /REP_DB=WormBase Gene ID /WP=CE01116 /TR=Q23572 /GB=CAA85466.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Ras-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063270 NCBI Caenorhabditis elegans ZK669.5 (ZK669.5) mRNA, complete cds. 11/11 None
SNAP00000000894 ENSEMBL cdna:SNAP chromosome:CEL140:II:7945581:7946825:-1 11/11 None
GENEFINDER00000000895 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7945581:7946798:-1 11/11 None
ZK669.5 ENSEMBL cdna:known chromosome:CEL140:II:7945416:7946825:-1 gene:ZK669.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7945577-7946822(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ras-like protein
Ensembl ZK669.5
Entrez Gene 174280 Entrez gene
SwissProt Q23572 EMBL-EBI
WormBase CE36260 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85466 Hypothetical protein ZK669.5 [Caenorhabditis elegans] ref|NP_495671.2| ZK669.5 [Caenorhabditis elegans] 1.0E-101
blast CAA85466 Hypothetical protein ZK669.5 [Caenorhabditis elegans] ref|NP_495671.2| ZK669.5 [Caenorhabditis elegans] 3.0E-96
blast CAA85466 Hypothetical protein ZK669.5 [Caenorhabditis elegans] ref|NP_495671.2| ZK669.5 [Caenorhabditis elegans] 8.0E-91
blast CAE59814 Hypothetical protein CBG03280 [Caenorhabditis briggsae] 2.0E-88
blast CAE59814 Hypothetical protein CBG03280 [Caenorhabditis briggsae] 1.0E-86
blast CAE59814 Hypothetical protein CBG03280 [Caenorhabditis briggsae] 2.0E-81
blast NP_001018579 hypothetical protein LOC553778 [Danio rerio] gb|AAH95213.1| Hypothetical protein LOC553778 [Danio rerio] 5.0E-12
Sequence
Target Sequence 
>C. ELEGANS:189359_S_AT
gatccaacttcttatgatcgagttttcaaatttcttattttcggaggcaaatcggttggt
aaaaagacgttgctccgatcattttgcacagaaggagataatgaaagtatttggacttct
cttactgttgatgatgagaaggttttaattgaagcaactgtttcacaaaaatgggaagaa
ggaatgtcaaaagagcacgatgcaattgctcttgttttttctacaactgatgtatatagt
ttcgaatacactttagaattatacaatgaaattcaaaaatcgacagagagaattcccctt
gtgttcatagaaaataaaatagatattgtggaagatagtcaaatggataaaggattagtt
gaaggagaaatgaggaaaaaacataagagactttatagagtgtcagcactgaaagaattc
aatgttatgcatccatttgcctacctcatcgagaaattgacacgacagaagaaagattta
aacgcgaatgagagaaaacagtcttcgtctgtaaattctacatcaacgtcaccaccatct
actacagttgaagcttgggttgaaccggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCAACTTCTTATGATCGAGTTT 588 415 49 Antisense
AAGACGTTGCTCCGATCATTTTGCA 474 153 112 Antisense
TTTGGACTTCTCTTACTGTTGATGA 162 667 158 Antisense
ATGCAATTGCTCTTGTTTTTTCTAC 146 45 248 Antisense
GACAGAGAGAATTCCCCTTGTGTTC 339 369 330 Antisense
ATGTTATGCATCCATTTGCCTACCT 685 47 470 Antisense
CATTTGCCTACCTCATCGAGAAATT 198 215 482 Antisense
AACAGTCTTCGTCTGTAAATTCTAC 293 137 545 Antisense
TAAATTCTACATCAACGTCACCACC 94 641 560 Antisense
GTCACCACCATCTACTACAGTTGAA 690 465 576 Antisense
CAGTTGAAGCTTGGGTTGAACCGGT 519 205 593 Antisense
Sequence Source Affymetrix Proprietary Database