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[189358_at] glycogenin like

Description T10B10.8 /REP_DB=WormBase Gene ID /WP=CE06406 /TR=Q22375 /GB=CAA96680.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=glycogenin like
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 81      6grp_total > 41      4grp_total > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 418.1
(-1.1)
P 		385
(-2.4)
P 		367.9
(-3)
P 		530.4
(3)
P 		163
B 394.6
(-1)
P 		272.3
(-3)
P 		313.9
(-2.3)
P 		639.7
(3)
P 		367
C 321.5
(-3)
P 		377.2
(-1.8)
P 		395.1
(-1.4)
P 		600.4
(3)
P 		279
avr 378.1
(-2.2) 		344.8
(-3) 		359
(-2.7) 		590.2
(3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 290.7
(0.1)
P 		251.4
(-0.8)
P 		424.3
(3)
P 		281.2
(-0.1)
P 		243.3
(-1)
P 		151.3
(-3)
P 		273
B 285.8
(0.4)
P 		318.3
(1.7)
P 		351.9
(3)
P 		302.8
(1.1)
P 		197.2
(-3)
P 		208.1
(-2.6)
P 		155
C 310
(2.8)
P 		305.4
(2.7)
P 		278.5
(1.6)
P 		314.3
(3)
P 		175.7
(-2.3)
P 		156.2
(-3)
P 		158
avr 295.5
(1.1) 		291.7
(1) 		351.6
(3) 		299.4
(1.3) 		205.4
(-1.9) 		171.9
(-3) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 152.2
(3)
P 		83.6
(-2.5)
P 		96.2
(-1.5)
P 		77.6
(-3)
P 		75
B 125.8
(2.1)
P 		67.3
(-3)
P 		72.7
(-2.5)
P 		136.3
(3)
P 		69
C 106.4
(-2.1)
P 		108.4
(-1.8)
P 		137.7
(3)
P 		101.2
(-3)
P 		37
avr 128.1
(3) 		86.4
(-3) 		102.2
(-0.7) 		105
(-0.3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 53.6
(-1.2)
P 		89.4
(2.7)
P 		92.4
(3)
P 		71.3
(0.7)
P 		73.4
(0.9)
P 		36.8
(-3)
P 		56
B 99.4
(1.6)
P 		105.9
(3)
P 		85.5
(-1.3)
P 		80.2
(-2.4)
P 		80.1
(-2.5)
P 		77.6
(-3)
P 		28
C 114.9
(3)
P 		93.2
(0.9)
P 		70.9
(-1.2)
P 		63.2
(-2)
P 		56.9
(-2.6)
P 		52.3
(-3)
P 		63
avr 89.3
(2) 		96.2
(3) 		82.9
(1) 		71.6
(-0.6) 		70.1
(-0.9) 		55.6
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17539
Sequence Type Exemplar sequence
Representative Public ID T10B10.8 NCBI
Target Description T10B10.8 /REP_DB=WormBase Gene ID /WP=CE06406 /TR=Q22375 /GB=CAA96680.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=glycogenin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078117(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078117 NCBI Caenorhabditis elegans T10B10.8 (T10B10.8) mRNA, complete cds. 11/11 None
GENEFINDER00000009618 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15162545:15166133:-1 11/11 None
SNAP00000009607 ENSEMBL cdna:SNAP chromosome:CEL140:X:15162690:15163585:-1 11/11 None
T10B10.8 ENSEMBL cdna:known chromosome:CEL140:X:15162545:15163585:-1 gene:T10B10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15162677-15164048(-) 87.58 100.0
Public Domain and Genome References
Gene Title glycogenin like
Ensembl T10B10.8
Entrez Gene 188365 Entrez gene
SwissProt Q22375 EMBL-EBI
WormBase CE28660 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96680 Hypothetical protein T10B10.8 [Caenorhabditis elegans] ref|NP_510518.1| T10B10.8 [Caenorhabditis elegans] 1.0E-157
blast CAA96680 Hypothetical protein T10B10.8 [Caenorhabditis elegans] ref|NP_510518.1| T10B10.8 [Caenorhabditis elegans] 1.0E-136
blast CAE63252 Hypothetical protein CBG07620 [Caenorhabditis briggsae] 1.0E-109
blast XP_466826 putative glycogenin 1 [Oryza sativa (japonica cultivar-group)] dbj|BAD23777.1| putative glycogenin 1 [Oryza sativa (japonica cultivar-group)] 2.0E-43
blast XP_466826 putative glycogenin 1 [Oryza sativa (japonica cultivar-group)] dbj|BAD23777.1| putative glycogenin 1 [Oryza sativa (japonica cultivar-group)] 3.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002495 EMBL-EBI Glycosyl transferase, family 8 7.8E-13
Pfam IPR002495 EMBL-EBI Glycosyl transferase, family 8 1.1E-20
Sequence
Target Sequence 
>C. ELEGANS:189358_AT
gcagcatgttgcatcagcggagtcatacgatggcggtgatcaaggatttttgaacactta
ctttagcgatctcaagtttgcaccaatgtatgacccgaacaaagcaccgcatacgtgcga
gaactattccatgaatcgattatctgcacaatttaattacgatattggaatgtattattt
gaacaatggaaggttacttgtggaccctgcaattttccattacactcttgggccaacaaa
gccatggttgtggtggacctatccgatatttgacttaaattggatgtggttggatgcaag
gcaggaaatggagcaaggatcaagtgcagattttgatacatgcgtttctctggccaccac
aaattgcttgctcatagtttctctacttgtcataaagctggttatcgagcgctttgtggt
caacgtaatcagtacgaggagtgtcagcagcatagaaactcatttagtttctcaatccat
atatttgttctcaatgtggtttgcattaaaacttgcacatccgtctgcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCATGTTGCATCAGCGGAGTCA 115 313 399 Antisense
AGCGATCTCAAGTTTGCACCAATGT 163 83 463 Antisense
TGTATGACCCGAACAAAGCACCGCA 69 561 485 Antisense
GTTACTTGTGGACCCTGCAATTTTC 157 445 591 Antisense
TTTCCATTACACTCTTGGGCCAACA 15 663 612 Antisense
GCCATGGTTGTGGTGGACCTATCCG 319 281 639 Antisense
TTTGATACATGCGTTTCTCTGGCCA 575 665 730 Antisense
TGGCCACCACAAATTGCTTGCTCAT 288 545 749 Antisense
CTTGCTCATAGTTTCTCTACTTGTC 646 217 765 Antisense
GGTTATCGAGCGCTTTGTGGTCAAC 104 507 798 Antisense
TAAAACTTGCACATCCGTCTGCACA 15 641 905 Antisense
Sequence Source Affymetrix Proprietary Database