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[189356_at] 7TM chemoreceptor, sri family

Description Y27F2A.7 /REP_DB=WormBase Gene ID /WP=CE26058 /GEN=sri-34 /GB=AAK72091.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 53      4grp_total > 20      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 37.6
(-2)
A 		28.8
(-3)
A 		32.7
(-2.6)
A 		83.8
(3)
P 		55
B 37.3
(0.6)
M 		19.8
(-3)
A 		28.8
(-1.1)
A 		48.8
(3)
A 		29
C 39.6
(1.1)
P 		53.3
(3)
A 		10.4
(-3)
A 		36.9
(0.7)
A 		43
avr 38.2
(-0.4) 		34
(-1.2) 		24
(-3) 		56.5
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 42.2
(0.9)
A 		26.5
(-2.1)
A 		44.4
(1.3)
P 		21.6
(-3)
A 		31.7
(-1.1)
A 		53.6
(3)
A 		32
B 16.7
(-2.5)
A 		13.8
(-3)
A 		51.7
(3)
A 		21
(-1.9)
A 		35.2
(0.4)
P 		22.3
(-1.7)
A 		38
C 25.1
(0.3)
A 		19.9
(-1)
A 		33.7
(2.6)
A 		31
(1.9)
A 		35.4
(3)
P 		12.4
(-3)
A 		23
avr 28
(-1) 		20.1
(-3) 		43.3
(3) 		24.5
(-1.9) 		34.1
(0.6) 		29.4
(-0.6) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.7
(3)
A 		6.2
(-3)
A 		8.5
(-1.2)
A 		12.3
(1.9)
P 		8
B 11.9
(3)
M 		4.9
(-3)
A 		6.7
(-1.5)
A 		10.4
(1.7)
A 		7
C 13.1
(1.9)
P 		15.3
(3)
A 		3.6
(-3)
A 		6.2
(-1.7)
A 		12
avr 12.9
(3) 		8.8
(-0.7) 		6.3
(-3) 		9.6
(-0) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.8
(-1.2)
A 		9.4
(0.1)
A 		9.7
(0.4)
P 		5.5
(-3)
A 		9.6
(0.3)
A 		13
(3)
A 		8
B 5.8
(-2.3)
A 		4.6
(-3)
A 		12.5
(1.9)
A 		5.6
(-2.4)
A 		14.3
(3)
P 		8.3
(-0.7)
A 		10
C 9.3
(1.2)
A 		6.1
(-1.4)
A 		8.6
(0.6)
A 		6.2
(-1.3)
A 		11.5
(3)
P 		4.1
(-3)
A 		7
avr 7.6
(-1.2) 		6.7
(-2.1) 		10.3
(1.5) 		5.8
(-3) 		11.8
(3) 		8.5
(-0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189356_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4136
Sequence Type Exemplar sequence
Representative Public ID Y27F2A.7 NCBI
Target Description Y27F2A.7 /REP_DB=WormBase Gene ID /WP=CE26058 /GEN=sri-34 /GB=AAK72091.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062062 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-34) (sri-34) mRNA, complete cds. 11/11 A 
Y27F2A.7 ENSEMBL cdna:known chromosome:CEL140:II:3157486:3159080:-1 gene:Y27F2A.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000006779 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3157484-3159079(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-34
Ensembl Y27F2A.7
Entrez Gene 191909 Entrez gene
SwissProt Q966C3 EMBL-EBI
WormBase CE26058 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494463 Serpentine Receptor, class I family member (sri-34) [Caenorhabditis elegans] gb|AAK72091.1| Serpentine receptor, class i protein 34 [Caenorhabditis elegans] 1.0E-173
blast NP_494462 Serpentine Receptor, class I family member (sri-33) [Caenorhabditis elegans] gb|AAK72090.1| Serpentine receptor, class i protein 33 [Caenorhabditis elegans] 1.0E-138
blast AAK71402 Serpentine receptor, class i protein 32 [Caenorhabditis elegans] ref|NP_494461.1| Serpentine Receptor, class I family member (sri-32) [Caenorhabditis elegans] 3.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.6E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494463.1 7 10-32,45-64,92-114,134-156,189-211,242-264,279-301
Y27F2A.7 7 10-32,45-64,92-114,134-156,189-211,242-264,279-301
Sequence
Target Sequence 
>C. ELEGANS:189356_AT
tggcatgtttttctagcaattgttggggttatcggagggatgttctgcgcaataactgga
gtttatactacagtagatattttcaaaatgttacaagaggtgcagacaaaagtgtctagt
tcaagctttcaacgctatcaatctgcaattcgtagtttggtatctcaaatgtttgcttct
ttgatgctatttgttccgttgttcatttttgtgatgcttataaccggtgtggataatggg
caatttattggagaacttctgcaatcaatttgtgcgttgcaatctattgtgaacgcggtg
gtgttaatattcacaacgcccagttatcgaaattttgttctacgccgccaaaaaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCATGTTTTTCTAGCAATTGTTG 595 545 580 Antisense
GCAATTGTTGGGGTTATCGGAGGGA 426 321 595 Antisense
ATCGGAGGGATGTTCTGCGCAATAA 321 35 610 Antisense
AAAAGTGTCTAGTTCAAGCTTTCAA 669 131 687 Antisense
AAATGTTTGCTTCTTTGATGCTATT 219 121 746 Antisense
CTTTGATGCTATTTGTTCCGTTGTT 126 221 758 Antisense
TTGTGATGCTTATAACCGGTGTGGA 680 673 788 Antisense
AACCGGTGTGGATAATGGGCAATTT 13 147 801 Antisense
ATATTCACAACGCCCAGTTATCGAA 231 19 886 Antisense
TATCGAAATTTTGTTCTACGCCGCC 35 653 904 Antisense
TTTGTTCTACGCCGCCAAAAAAGCT 707 663 913 Antisense
Sequence Source Affymetrix Proprietary Database