[Home] | [Total List]

[189355_at] hormone receptor

Description ZC374.1 /REP_DB=WormBase Gene ID /WP=CE03803 /TR=Q23265 /GB=CAA96699.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=hormone receptor
Cluster 6grp_total > 47      4grp_total > 24      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 28.4
(-1.4)
A 		12
(-3)
A 		43.8
(0.1)
A 		73.2
(3)
A 		61
B 25.5
(-3)
A 		46.2
(3)
A 		43.2
(2.1)
A 		25.4
(-3)
A 		21
C 35.7
(1.6)
A 		39.7
(3)
A 		28.9
(-0.8)
A 		22.7
(-3)
A 		17
avr 29.9
(-3) 		32.6
(-1.5) 		38.6
(2) 		40.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 52.4
(3)
A 		37.8
(0.6)
A 		17.5
(-2.7)
A 		15.9
(-3)
A 		18.1
(-2.6)
A 		44.8
(1.8)
A 		37
B 12.4
(-3)
A 		34.5
(3)
A 		19.1
(-1.2)
A 		21.2
(-0.6)
A 		25
(0.4)
A 		34.1
(2.9)
A 		22
C 30.1
(-1.5)
A 		17.7
(-3)
A 		39.4
(-0.3)
A 		66.5
(3)
A 		22.3
(-2.4)
A 		22.4
(-2.4)
A 		49
avr 31.6
(1.6) 		30
(0.9) 		25.3
(-1.3) 		34.5
(3) 		21.8
(-3) 		33.8
(2.7) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10.3
(2.2)
A 		2.6
(-3)
A 		11.5
(3)
A 		10.7
(2.5)
A 		9
B 8.1
(-0.3)
A 		11.4
(3)
A 		10
(1.6)
A 		5.4
(-3)
A 		6
C 11.8
(3)
A 		11.4
(2.7)
A 		10.1
(1.7)
A 		3.8
(-3)
A 		8
avr 10.1
(2.4) 		8.5
(-0.1) 		10.5
(3) 		6.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 9.7
(0.7)
A 		13.4
(3)
A 		3.8
(-3)
A 		4
(-2.9)
A 		5.5
(-1.9)
A 		10.9
(1.4)
A 		10
B 4.3
(-3)
A 		11.5
(2.1)
A 		4.6
(-2.8)
A 		5.6
(-2.1)
A 		10.1
(1.1)
A 		12.7
(3)
A 		8
C 11.1
(1.3)
A 		5.4
(-3)
A 		10
(0.5)
A 		13.4
(3)
A 		7.2
(-1.7)
A 		7.5
(-1.4)
A 		8
avr 8.4
(0.2) 		10.1
(2.6) 		6.1
(-3) 		7.7
(-0.8) 		7.6
(-0.9) 		10.4
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16613
Sequence Type Exemplar sequence
Representative Public ID ZC374.1 NCBI
Target Description ZC374.1 /REP_DB=WormBase Gene ID /WP=CE03803 /TR=Q23265 /GB=CAA96699.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=hormone receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077284 NCBI Caenorhabditis elegans ZC374.1 (ZC374.1) mRNA, complete cds. 11/11 None
ZC374.1 ENSEMBL cdna:known chromosome:CEL140:X:10049390:10052411:1 gene:ZC374.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000006425 8/11 Cross Hyb Matching Probes None
SNAP00000006424 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10049389-10052411(+) 100.0 100.0
Public Domain and Genome References
Gene Title hormone receptor
Ensembl ZC374.1
Entrez Gene 191147 Entrez gene
SwissProt Q23265 EMBL-EBI
WormBase CE03803 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96699 Hypothetical protein ZC374.1 [Caenorhabditis elegans] ref|NP_509685.1| ZC374.1 [Caenorhabditis elegans] 1.0E-173
blast CAE58748 Hypothetical protein CBG01938 [Caenorhabditis briggsae] 1.0E-147
blast CAE60908 Hypothetical protein CBG04624 [Caenorhabditis briggsae] 3.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.1E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509685.1 5 20-42,62-84,94-116,136-158,191-213
ZC374.1 5 20-42,62-84,94-116,136-158,191-213
Sequence
Target Sequence 
>C. ELEGANS:189355_AT
tattcagttttctttgtgctctgccttttcatctttggtcgaacatggtagcagctattg
caattgacatgctttgctgtattacatctccactgagcagctatcgaacaggggcaaacc
gagttaattggcttattactcttgcgtggggctttgcagttgtatgtgcatcaccaatga
gcattctgcgtggaaccattcagatcaacgatgaagatatgtatcaatgctacccaagaa
ctgatgtattcaatgatgatgtgttaattgcattcaacctgtttcatgtcataacttcgt
tttacattccattgttgattgttatcatatgctatttggctatcggggtatcgatacgga
aacaaatggcggaacgtcgtttattacaggaagtcggtctatccgccgatcgacgacggt
ccgggaagccgaggcccagcggattgttgccgcagcaaatcgcgcacaccgagaacaaaa
ctcctcccaagtgtcgcctcgaggtacacgcgccacggttcgagaacagacgcgcgtcgc
aaatcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCAGTTTTCTTTGTGCTCTGCC 509 663 296 Antisense
CTGCCTTTTCATCTTTGGTCGAACA 665 235 316 Antisense
GACATGCTTTGCTGTATTACATCTC 261 369 361 Antisense
ATTACATCTCCACTGAGCAGCTATC 673 9 376 Antisense
TTGGCTTATTACTCTTGCGTGGGGC 450 655 423 Antisense
TGAGCATTCTGCGTGGAACCATTCA 582 569 473 Antisense
ATTGCATTCAACCTGTTTCATGTCA 159 7 562 Antisense
ATGCTATTTGGCTATCGGGGTATCG 406 41 624 Antisense
ACAGGAAGTCGGTCTATCCGCCGAT 486 107 681 Antisense
TTGTTGCCGCAGCAAATCGCGCACA 530 707 739 Antisense
GAACAGACGCGCGTCGCAAATCGAC 654 351 819 Antisense
Sequence Source Affymetrix Proprietary Database