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[189354_at] cytochrome P450

Description T10H4.10 /REP_DB=WormBase Gene ID /WP=CE16395 /TR=O62378 /GB=CAB03340.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_total > 94      4grp_total > 08      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 21.9
(-3)
A 		30.2
(-2)
A 		69.4
(3)
A 		68.3
(2.9)
A 		48
B 6.3
(-3)
A 		28.7
(-0.6)
A 		13.3
(-2.2)
A 		61.9
(3)
A 		56
C 45.9
(-1.5)
A 		40.8
(-2.1)
A 		32.7
(-3)
A 		84.9
(3)
A 		52
avr 24.7
(-3) 		33.2
(-1.9) 		38.5
(-1.2) 		71.7
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 23.5
(-0.6)
A 		31.8
(0.4)
A 		4.6
(-3)
A 		38.7
(1.3)
A 		37.2
(1.1)
A 		52.7
(3)
A 		48
B 4.9
(-3)
A 		28.7
(0)
A 		48.1
(2.5)
A 		51.8
(3)
A 		29.6
(0.2)
A 		37.9
(1.2)
A 		47
C 28.1
(-1.3)
A 		50.8
(0.8)
A 		19.9
(-2.1)
A 		13.4
(-2.7)
A 		73.3
(3)
A 		10.7
(-3)
A 		63
avr 18.8
(-3) 		37.1
(0.9) 		24.2
(-1.8) 		34.6
(0.4) 		46.7
(3) 		33.8
(0.2) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 8
(-2.3)
A 		6.6
(-3)
A 		18.1
(3)
A 		10
(-1.2)
A 		12
B 2
(-3)
A 		7.1
(-0.3)
A 		3.1
(-2.4)
A 		13.2
(3)
A 		11
C 15.2
(3)
A 		11.7
(-2.5)
A 		11.4
(-3)
A 		14.3
(1.6)
A 		4
avr 8.4
(-3) 		8.5
(-2.9) 		10.9
(0.7) 		12.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.3
(-1.3)
A 		11.3
(2.2)
A 		1
(-3)
A 		9.8
(1.5)
A 		11.2
(2.2)
A 		12.8
(3)
A 		12
B 1.7
(-3)
A 		9.5
(0.8)
A 		11.7
(1.8)
A 		13.7
(2.8)
A 		12
(2)
A 		14.1
(3)
A 		12
C 10.4
(-0.8)
A 		15.5
(0.7)
A 		5.1
(-2.3)
A 		2.7
(-3)
A 		23.7
(3)
A 		3.6
(-2.7)
A 		21
avr 5.5
(-3) 		12.1
(0.9) 		5.9
(-2.8) 		8.7
(-1.1) 		15.6
(3) 		10.2
(-0.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189354_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13986
Sequence Type Exemplar sequence
Representative Public ID T10H4.10 NCBI
Target Description T10H4.10 /REP_DB=WormBase Gene ID /WP=CE16395 /TR=O62378 /GB=CAB03340.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074386 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-34A1) (cyp-34A1) mRNA, complete cds. 11/11 None
SNAP00000030482 ENSEMBL cdna:SNAP chromosome:CEL140:V:15288191:15290511:-1 11/11 None
GENEFINDER00000030486 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15288191:15290511:-1 11/11 None
T10H4.10 ENSEMBL cdna:known chromosome:CEL140:V:15288191:15290511:-1 gene:T10H4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15288190-15290511(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-34A1
Ensembl T10H4.10
Entrez Gene 188399 Entrez gene
SwissProt O62378 EMBL-EBI
WormBase CE16395 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03340 Hypothetical protein T10H4.10 [Caenorhabditis elegans] ref|NP_506787.1| CYtochrome P450 family member (cyp-34A1) [Caenorhabditis elegans] 0.0
blast CAB03339 Hypothetical protein T10H4.11 [Caenorhabditis elegans] ref|NP_506788.1| CYtochrome P450 family member (cyp-34A2) [Caenorhabditis elegans] 0.0
blast CAE71667 Hypothetical protein CBG18639 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
p450 CPA9_MESAU Animalia; CYP2A9; ham; CPA9_MESAU; Hamster; P24455 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.1E-81
Sequence
Target Sequence 
>C. ELEGANS:189354_AT
tgagaacctcgccgtagacatgtacgatctctggcttggcggtcaggaaacgacctcgac
aaccttgaactgggcgtgcgcatgtcttttaaatcgtcctgacgtcatcacaaccgctcg
tgaggagttaattcgagtgactggaggacacagatcactatcactgattgataggaggga
gacaccgtatctatcagctgtaatcagtgaagttcaacgctttgcatccatccttaacat
gaacctatttcgaattataaaagaggatactgtagttgatggtcaacctctacgggcggg
aactgccgtgacagcgcatattgcaatgatccatgtggatgaggatttattcaaaaatca
cacagagttcagaccagaaagatttctagaaaacgatgatctcgacaagaaacttattcc
atttggaattggcagaagatcatgcctcggagaatcactagccaaggctgaactgtactt
ggtccttggaaacctgctcctagactacgacctggaaccagtcggggaaattccgaagct
caaaacgttggctccatttgggttgctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGAACCTCGCCGTAGACATGTAC 122 569 909 Antisense
ATCTCTGGCTTGGCGGTCAGGAAAC 554 31 935 Antisense
CAGGAAACGACCTCGACAACCTTGA 208 149 952 Antisense
GAACTGGGCGTGCGCATGTCTTTTA 655 347 975 Antisense
CGTCATCACAACCGCTCGTGAGGAG 689 245 1011 Antisense
GAGGGAGACACCGTATCTATCAGCT 510 401 1083 Antisense
TGAAGTTCAACGCTTTGCATCCATC 251 573 1116 Antisense
AGTTGATGGTCAACCTCTACGGGCG 415 63 1182 Antisense
GAACTGCCGTGACAGCGCATATTGC 399 349 1208 Antisense
TACTTGGTCCTTGGAAACCTGCTCC 365 643 1384 Antisense
CGTTGGCTCCATTTGGGTTGCTCAA 10 249 1454 Antisense
Sequence Source Affymetrix Proprietary Database