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[189352_s_at]

Description C10C5.6A /REP_DB=WormBase Gene ID /WP=CE05254 /TR=Q17901 /GB=CAA93506.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YHY6 like
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 53      4grp_high_8_8 > 08      6grp_highest_nonorm > 83      6grp_total > 36      4grp_total > 31      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 392
1 2 3 4 range
A 641.9
(3)
P 		285.5
(-2.5)
P 		250
(-3)
P 		523.3
(1.2)
P 		392
B 620.1
(3)
P 		271.6
(-3)
P 		316.9
(-2.2)
P 		481.1
(0.6)
P 		349
C 582.2
(3)
P 		299.3
(-3)
P 		356.1
(-1.8)
P 		443
(0)
P 		283
avr 614.7
(3) 		285.5
(-3) 		307.7
(-2.6) 		482.5
(0.6) 		329

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 424.8
(-0)
P 		562.3
(3)
P 		289.6
(-3)
P 		405.6
(-0.4)
P 		344.9
(-1.8)
P 		524.7
(2.2)
P 		273
B 478.8
(2.9)
P 		480.2
(3)
P 		386.5
(-1.1)
P 		393.5
(-0.8)
P 		342.7
(-3)
P 		467.3
(2.4)
P 		138
C 583.7
(3)
P 		516.8
(1.3)
P 		477.2
(0.3)
P 		348.5
(-3)
P 		356.6
(-2.8)
P 		501.4
(0.9)
P 		235
avr 495.8
(2.2) 		519.8
(3) 		384.4
(-1.7) 		382.5
(-1.8) 		348.1
(-3) 		497.8
(2.2) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 233.7
(3)
P 		62
(-3)
P 		65.4
(-2.9)
P 		76.6
(-2.5)
P 		172
B 197.8
(3)
P 		67.1
(-3)
P 		73.4
(-2.7)
P 		102.5
(-1.4)
P 		131
C 192.7
(3)
P 		86.1
(-2.4)
P 		124.1
(-0.5)
P 		74.7
(-3)
P 		118
avr 208.1
(3) 		71.7
(-3) 		87.6
(-2.3) 		84.6
(-2.4) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 78.3
(-2.3)
P 		200
(3)
P 		63.1
(-3)
P 		102.9
(-1.3)
P 		104.1
(-1.2)
P 		127.8
(-0.2)
P 		137
B 166.6
(2.4)
P 		159.8
(1.9)
P 		93.8
(-3)
P 		104.2
(-2.2)
P 		139.2
(0.4)
P 		174.2
(3)
P 		80
C 216.4
(3)
P 		157.7
(0.6)
P 		121.5
(-0.9)
P 		70.1
(-3)
P 		115.4
(-1.1)
P 		167.8
(1)
P 		146
avr 153.8
(1.6) 		172.5
(3) 		92.8
(-3) 		92.4
(-3) 		119.6
(-1) 		156.6
(1.8) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189352_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9484
Sequence Type Exemplar sequence
Representative Public ID C10C5.6A NCBI
Target Description C10C5.6A /REP_DB=WormBase Gene ID /WP=CE05254 /TR=Q17901 /GB=CAA93506.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast YHY6 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069253(11), NM_069252(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069253 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-15) (daf-15) mRNA, complete cds. 11/11 None
NM_069252 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-15) (daf-15) mRNA, complete cds. 11/11 None
SNAP00000006175 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9393674:9394510:1 10/11 None
GENEFINDER00000006187 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9393706:9394510:1 10/11 None
C10C5.6a ENSEMBL cdna:known chromosome:CEL140:IV:9386185:9394510:1 gene:C10C5.6 11/11 None
C10C5.6b ENSEMBL cdna:known chromosome:CEL140:IV:9386441:9394899:1 gene:C10C5.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9386190-9394285(+) 97.79 100.0
Public Domain and Genome References
Ensembl C10C5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR29589 DAF-15 [Caenorhabditis elegans] 0.0
blast CAA92448 Hypothetical protein C10C5.6a [Caenorhabditis elegans] emb|CAA93506.2| Hypothetical protein C10C5.6a [Caenorhabditis elegans] ref|NP_501654.1| abnormal DAuer Formation family member (daf-15) [Caenorhabditis elegans] 0.0
blast CAA92449 Hypothetical protein C10C5.6b [Caenorhabditis elegans] emb|CAA93507.2| Hypothetical protein C10C5.6b [Caenorhabditis elegans] ref|NP_501653.1| abnormal DAuer Formation family member (daf-15) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:189352_S_AT
ggttatgctgatggtcgagtcgactattttgatatgcgaatggctaatccaaaagctgca
cgttgtaatcttgctcctgtaaatatgtcaaaacagtttaatgatcgaccacctggaatt
atgcatttgagagttaatagacaaggttttggtactgaattatttgctggaagtcaagat
ggaagtatctacaagttacaacttagaatgtttaaggaagcaactccatcaatcgttact
ccttgggaatacggagctcattctcatatgtttgttcacgaagattcccgaattcttgca
agtgctggtggtggagaattagcaatctacgacgttgctcaaaataagctaatggctcgt
atcttaccacccggagagcccaattcaatgaggagagataaaaattcaagcacatttgga
ttgttcagctcacaaaggaaactatcacaagttcaaatgagtggaagaatgtcatcgatg
tcttcagcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTATGCTGATGGTCGAGTCGACT 97 507 4747 Antisense
AGCTGCACGTTGTAATCTTGCTCCT 389 81 4800 Antisense
GTAATCTTGCTCCTGTAAATATGTC 217 463 4811 Antisense
TCGACCACCTGGAATTATGCATTTG 225 603 4851 Antisense
GAAGCAACTCCATCAATCGTTACTC 165 341 4963 Antisense
GCTCATTCTCATATGTTTGTTCACG 420 301 5002 Antisense
GATTCCCGAATTCTTGCAAGTGCTG 466 433 5029 Antisense
AGCTAATGGCTCGTATCTTACCACC 457 75 5093 Antisense
ACCCGGAGAGCCCAATTCAATGAGG 372 83 5115 Antisense
GCACATTTGGATTGTTCAGCTCACA 170 317 5156 Antisense
GAATGTCATCGATGTCTTCAGCAAC 16 333 5213 Antisense
Sequence Source Affymetrix Proprietary Database