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[189350_at] cytochrome P450

Description T19B10.1 /REP_DB=WormBase Gene ID /WP=CE06455 /TR=Q21424 /GB=CAA98548.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 20      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 22      6grp_total > 23      4grp_total > 05      6grp_highest_sub > 01_02_03      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1562
1 2 3 4 range
A 1048.9
(-0.8)
P 		478.5
(-3)
P 		599.8
(-2.5)
P 		2013.3
(3)
P 		1535
B 1082
(-0.1)
P 		536.5
(-2.8)
P 		502.8
(-3)
P 		1681.9
(3)
P 		1179
C 1034.6
(-0.3)
P 		451.7
(-3)
P 		618.8
(-2.2)
P 		1746.3
(3)
P 		1295
avr 1055.2
(-0.4) 		488.9
(-3) 		573.8
(-2.6) 		1813.8
(3) 		1325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1550
1 2 3 4 5 6 range
A 2406.5
(3)
P 		1895.3
(0.9)
P 		2375.8
(2.9)
P 		1590
(-0.4)
P 		948.5
(-3)
P 		979.1
(-2.9)
P 		1458
B 1922.6
(3)
P 		1800.4
(2.2)
P 		1652.9
(1.3)
P 		1620.1
(1.1)
P 		977.3
(-3)
P 		1145
(-1.9)
P 		945
C 1822.4
(1)
P 		2001
(1.7)
P 		2313.9
(3)
P 		1588
(0)
P 		856.8
(-3)
P 		1027.5
(-2.3)
P 		1457
avr 2050.5
(2.7) 		1898.9
(1.9) 		2114.2
(3) 		1599.4
(0.4) 		927.5
(-3) 		1050.5
(-2.4) 		1187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 278
1 2 3 4 range
A 381.9
(3)
P 		103.9
(-3)
P 		156.8
(-1.9)
P 		294.7
(1.1)
P 		278
B 345
(2.7)
P 		132.5
(-2.6)
P 		116.5
(-3)
P 		358.4
(3)
P 		242
C 342.5
(3)
P 		129.9
(-3)
P 		215.7
(-0.6)
P 		294.4
(1.6)
P 		213
avr 356.5
(3) 		122.1
(-3) 		163
(-2) 		315.8
(2) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 443.6
(-0.2)
P 		674.1
(3)
P 		517.4
(0.8)
P 		403.3
(-0.7)
P 		286.2
(-2.3)
P 		238.4
(-3)
P 		436
B 669
(3)
P 		599.3
(1.5)
P 		401.4
(-2.9)
P 		429.1
(-2.3)
P 		397.1
(-3)
P 		427
(-2.3)
P 		272
C 675.5
(3)
P 		610.6
(2)
P 		588.9
(1.7)
P 		319.4
(-2.4)
P 		277.2
(-3)
P 		344
(-2)
P 		398
avr 596
(2.4) 		628
(3) 		502.6
(0.6) 		383.9
(-1.8) 		320.2
(-3) 		336.5
(-2.7) 		308
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189350_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12603
Sequence Type Exemplar sequence
Representative Public ID T19B10.1 NCBI
Target Description T19B10.1 /REP_DB=WormBase Gene ID /WP=CE06455 /TR=Q21424 /GB=CAA98548.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073446 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-29A2) (cyp-29A2) mRNA, complete cds. 11/11 None
SNAP00000024741 ENSEMBL cdna:SNAP chromosome:CEL140:V:11220791:11222436:1 11/11 None
GENEFINDER00000024756 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11220791:11225301:1 11/11 None
T19B10.1 ENSEMBL cdna:known chromosome:CEL140:V:11220171:11222468:1 gene:T19B10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11220328-11222436(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-29A2
Ensembl T19B10.1
Entrez Gene 179550 Entrez gene
SwissProt Q21424 EMBL-EBI
WormBase CE06455 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98548 Hypothetical protein T19B10.1 [Caenorhabditis elegans] emb|CAA98515.1| Hypothetical protein T19B10.1 [Caenorhabditis elegans] ref|NP_505847.1| CYtochrome P450 family member (cyp-29A2) [Caenorhabditis elegans] 0.0
blast CAE75191 Hypothetical protein CBG23137 [Caenorhabditis briggsae] 0.0
blast CAA98547 Hypothetical protein T19B10.2 [Caenorhabditis elegans] ref|NP_505848.1| T19B10.2 [Caenorhabditis elegans] 0.0
blast CAE75192 Hypothetical protein CBG23138 [Caenorhabditis briggsae] 0.0
blast CAB11775 Hypothetical protein B0331.1 [Caenorhabditis elegans] ref|NP_505490.1| CYtochrome P450 family member (cyp-29A4) [Caenorhabditis elegans] 1.0E-168
Protein Families
Method ID Description E-Value
p450 CP11_STECH Animalia; CYP1A; Sch; CP11_STECH; Stenotomus chrysops; Q92116 1.0E-111
p450 CP15_CHICK Animalia; CYP1A5; chi; CP15_CHICK; Gallus gallus; P79761 7.0E-98
p450 CP15_CHICK Animalia; CYP1A5; chi; CP15_CHICK; Gallus gallus; P79761 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.9E-103
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.9E-103
Pfam IPR001128 EMBL-EBI Cytochrome P450 8.3E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505847.1 1 2-24
T19B10.1 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:189350_AT
gtttgctggtcacgatacaacaacatcttctacttcatgggcttgttggaatttagctca
taatccgaatgttcaagaaaaagtgtacaaagagatgattgaggtgtttggagatgatcc
aaatacagatattacactggaaaatgtgaataatctgaactatttggatatagttctcaa
ggaatcaaaacgaattatcgcaccagttcctgcacttcaaagaaaattaacaaatgattt
agaaattgatggatacatagttcccgctggtggcaatgtgacaatatctccaatggttct
tcacagcaatcatcacgtgttcaaaaatccaacagaattcaatcctgacagatttcttcc
ggatgaagtttcaaagagacatccgtatgattttatgcctttcttggctggtcctcgtaa
ttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGCTGGTCACGATACAACAACA 314 451 936 Antisense
AACATCTTCTACTTCATGGGCTTGT 89 139 957 Antisense
AACGAATTATCGCACCAGTTCCTGC 591 143 1124 Antisense
CACCAGTTCCTGCACTTCAAAGAAA 601 201 1136 Antisense
TAGTTCCCGCTGGTGGCAATGTGAC 201 649 1193 Antisense
TATCTCCAATGGTTCTTCACAGCAA 498 659 1220 Antisense
TTCACAGCAATCATCACGTGTTCAA 454 685 1235 Antisense
TCAATCCTGACAGATTTCTTCCGGA 210 633 1274 Antisense
GAGACATCCGTATGATTTTATGCCT 377 393 1311 Antisense
TTTTATGCCTTTCTTGGCTGGTCCT 214 675 1326 Antisense
TTTCTTGGCTGGTCCTCGTAATTGT 62 673 1335 Antisense
Sequence Source Affymetrix Proprietary Database