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[189349_at]

Description T10B10.7 /REP_DB=WormBase Gene ID /WP=CE06405 /TR=Q22374 /GB=CAA96679.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ankyrin repeats
Cluster 6grp_total > 09      4grp_total > 02      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 11.6
(-3)
A 		15.8
(3)
A 		15.6
(2.7)
A 		15.7
(2.9)
A 		4
B 9.9
(0.2)
A 		11.6
(1.7)
A 		13
(3)
A 		6.3
(-3)
A 		7
C 27.7
(-2)
A 		18.8
(-2.9)
A 		18.2
(-3)
A 		72.5
(3)
A 		54
avr 16.4
(-2.6) 		15.4
(-3) 		15.6
(-2.9) 		31.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 6.8
(-3)
A 		11.3
(-1.6)
A 		8.3
(-2.5)
A 		14.7
(-0.5)
A 		25.5
(3)
A 		16.3
(0)
A 		19
B 8.1
(-2.4)
A 		5.7
(-3)
A 		11.4
(-1.7)
A 		31.8
(3)
A 		11.9
(-1.6)
A 		7.8
(-2.5)
A 		26
C 60.3
(3)
A 		10.1
(-2.2)
A 		23.3
(-0.8)
A 		7.5
(-2.5)
A 		19.9
(-1.2)
A 		2.5
(-3)
A 		58
avr 25.1
(3) 		9
(-3) 		14.3
(-1) 		18
(0.4) 		19.1
(0.8) 		8.9
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.2
(3)
A 		3.4
(0.5)
A 		4.1
(2.7)
A 		2.3
(-3)
A 		2
B 3.1
(3)
A 		2.9
(2.3)
A 		3
(2.7)
A 		1.3
(-3)
A 		2
C 9.2
(0.4)
A 		5.4
(-3)
A 		6.3
(-2.2)
A 		12.2
(3)
A 		7
avr 5.5
(3) 		3.9
(-3) 		4.5
(-0.8) 		5.3
(2.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.2
(-3)
A 		4
(-0.4)
A 		1.8
(-2.4)
A 		3.7
(-0.7)
A 		7.7
(3)
A 		4
(-0.4)
A 		7
B 2.8
(-2.2)
A 		1.9
(-3)
A 		2.8
(-2.2)
A 		8.4
(3)
A 		4.8
(-0.3)
A 		2.9
(-2.1)
A 		7
C 22.3
(3)
A 		3.1
(-2.4)
A 		5.9
(-1.6)
A 		1.5
(-2.8)
A 		6.4
(-1.5)
A 		0.9
(-3)
A 		21
avr 8.8
(3) 		3
(-2.6) 		3.5
(-2.1) 		4.5
(-1.2) 		6.3
(0.6) 		2.6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189349_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17377
Sequence Type Exemplar sequence
Representative Public ID T10B10.7 NCBI
Target Description T10B10.7 /REP_DB=WormBase Gene ID /WP=CE06405 /TR=Q22374 /GB=CAA96679.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ankyrin repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078119
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000009625 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15168657:15173489:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078119 7/11 Cross Hyb Matching Probes None
SNAP00000009609 7/11 Cross Hyb Matching Probes None
T10B10.7 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15168656-15170898(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE63251 Hypothetical protein CBG07619 [Caenorhabditis briggsae] 0.0
blast CAA96679 Hypothetical protein T10B10.7 [Caenorhabditis elegans] ref|NP_510520.3| Osm-9 and Capsaicin receptor-Related family member (ocr-3) [Caenorhabditis elegans] 0.0
blast AAC04431 Osm-9 and capsaicin receptor-related protein 2 [Caenorhabditis elegans] ref|NP_501380.1| Osm-9 and Capsaicin receptor-Related family member (ocr-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 1.4E-5
Pfam IPR002110 EMBL-EBI Ankyrin 7.0E-4
Pfam IPR002110 EMBL-EBI Ankyrin 7.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009625 4 411-430,565-587,609-631,687-709
Sequence
Target Sequence 
>C. ELEGANS:189349_AT
gcttacgcctttagcattggcagctagactggcaaagaagcatatttacgatttgatatt
ggaatgtgacatggacatttcatggaggtatggaccggtggtctgtaaggcctatccact
taatgatgtggacactatcaacgaaagtgatggctcgctcaacccaaactcagttatagc
gaatgtagtgtacggagacaaagtggatcatttggagttttttgatgggctcattgagga
agtcttggagagcaagtgggagactttcggcaaaaaacaactttttatgtcactcgctgg
atatatatactttctggcggtgttttatctcgctttcatgaccagagatgcccacattct
cccaagtgatgaggacgaaaatgaaaagtttggaatgattgaactagatttctcaaattt
cacaaatattctcagcgaggggttaagtttgagagaacatttagcaattgcgagaatggc
agaaagagaagctctaccagcacactgccatctttgggattattcaggaccatcgcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTACGCCTTTAGCATTGGCAGCT 470 305 972 Antisense
TGGACCGGTGGTCTGTAAGGCCTAT 215 547 1062 Antisense
ACGAAAGTGATGGCTCGCTCAACCC 200 93 1112 Antisense
CTCGCTCAACCCAAACTCAGTTATA 208 233 1125 Antisense
CAACTTTTTATGTCACTCGCTGGAT 585 187 1249 Antisense
CTGGCGGTGTTTTATCTCGCTTTCA 622 241 1285 Antisense
GCTTTCATGACCAGAGATGCCCACA 215 305 1303 Antisense
TGCCCACATTCTCCCAAGTGATGAG 38 585 1320 Antisense
AAAGAGAAGCTCTACCAGCACACTG 481 123 1454 Antisense
AGCACACTGCCATCTTTGGGATTAT 686 75 1470 Antisense
GGGATTATTCAGGACCATCGCAACA 250 493 1487 Antisense
Sequence Source Affymetrix Proprietary Database