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[189348_at] 7TM chemoreceptor, srh family

Description ZC404.12 /REP_DB=WormBase Gene ID /WP=CE26696 /GEN=srh-30 /GB=AAK71420.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 15      4grp_total > 04      6grp_cgc > 32      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 20.3
(-2.7)
A 		16.9
(-3)
A 		37.2
(-1.4)
A 		92.8
(3)
P 		76
B 49.3
(0.8)
A 		9.4
(-2.6)
A 		4.2
(-3)
A 		75.5
(3)
M 		71
C 9
(-2.8)
A 		8.9
(-2.8)
A 		5.7
(-3)
A 		95.5
(3)
A 		90
avr 26.2
(-1.9) 		11.7
(-3) 		15.7
(-2.7) 		87.9
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 49.8
(3)
A 		26.1
(-0.1)
A 		10.7
(-2)
A 		3.3
(-3)
A 		12.7
(-1.8)
A 		5.7
(-2.7)
A 		47
B 9
(-3)
A 		11.9
(-1.6)
A 		18.2
(1.5)
A 		16.6
(0.7)
A 		20.1
(2.4)
A 		21.4
(3)
A 		12
C 7.7
(-2.4)
A 		27.3
(3)
A 		12
(-1.2)
A 		12.4
(-1.1)
A 		8.2
(-2.2)
A 		5.4
(-3)
A 		22
avr 22.2
(3) 		21.8
(2.8) 		13.6
(-1.5) 		10.8
(-3) 		13.7
(-1.5) 		10.8
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.4
(-0.8)
A 		3.7
(-3)
A 		9.7
(0.6)
A 		13.6
(3)
P 		10
B 15.7
(2.8)
A 		2.3
(-2.5)
A 		1
(-3)
A 		16.1
(3)
M 		15
C 3
(-2.6)
A 		2.6
(-2.7)
A 		2
(-3)
A 		16.1
(3)
A 		14
avr 8.7
(-0.2) 		2.9
(-3) 		4.2
(-2.4) 		15.3
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.2
(2.9)
A 		9.3
(3)
A 		2.3
(-1.9)
A 		0.8
(-3)
A 		3.8
(-0.9)
A 		1.4
(-2.6)
A 		9
B 3.1
(-3)
A 		4
(-1.9)
A 		4.4
(-1.5)
A 		4.4
(-1.5)
A 		8.2
(3)
A 		8
(2.8)
A 		5
C 2.9
(-2)
A 		8.3
(3)
A 		3
(-1.9)
A 		2.5
(-2.4)
A 		2.7
(-2.2)
A 		1.8
(-3)
A 		7
avr 5.1
(0.3) 		7.2
(3) 		3.2
(-2.2) 		2.6
(-3) 		4.9
(0) 		3.7
(-1.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12187
Sequence Type Exemplar sequence
Representative Public ID ZC404.12 NCBI
Target Description ZC404.12 /REP_DB=WormBase Gene ID /WP=CE26696 /GEN=srh-30 /GB=AAK71420.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072313(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072313 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-30) (srh-30) mRNA, complete cds. 11/11 None
ZC404.12 ENSEMBL cdna:known chromosome:CEL140:V:6772363:6774282:-1 gene:ZC404.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042512 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042527 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6773306-6774283(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-30
Ensembl ZC404.12
Entrez Gene 191851 Entrez gene
SwissProt Q95PY3 EMBL-EBI
WormBase CE26696 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK71420 Serpentine receptor, class h protein 30 [Caenorhabditis elegans] ref|NP_504714.1| Serpentine Receptor, class H family member (srh-30) [Caenorhabditis elegans] 0.0
blast CAE71948 Hypothetical protein CBG19015 [Caenorhabditis briggsae] 1.0E-135
blast AAA97961 Serpentine receptor, class h protein 28 [Caenorhabditis elegans] ref|NP_504715.2| Serpentine Receptor, class H family member (srh-28) [Caenorhabditis elegans] 1.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504714.1 7 15-37,50-72,98-120,141-163,205-227,248-270,280-302
ZC404.12 7 15-37,50-72,98-120,141-163,205-227,248-270,280-302
Sequence
Target Sequence 
>C. ELEGANS:189348_AT
gtattctaactgcacatattctcggatgtcttgttgaagagttctacgggtttcaactat
tccgcccaatggtgttcgttcccgtgattggagtttatgcagatggcattctctcctggc
tgggagttcatcctttcatacagctatacgggatgatgctctctgtccaaatcaatttgg
gaattcttacacatatcacattttatcgaatgaaaataattatcccaatgtcgtttcgat
actatacaagatgtattcagtttggaattttgagtactgtagcgatgtatactggcgcag
tgttaacagtcaatattctttttttcacaatagaaaatcaacaaaatgcaaagagttttt
atgcgaattccaacaccattccagatatgctatggtctgagaagtatatagtatcatctc
caagaaacccctattacaactcttttctaattggtgcggctatgtgtataggattttata
tattactttgcattattattccttcgatatgttatgctgtcctgcatcgaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTCTAACTGCACATATTCTCGG 192 453 170 Antisense
GTGTTCGTTCCCGTGATTGGAGTTT 376 483 241 Antisense
TATGCAGATGGCATTCTCTCCTGGC 295 657 265 Antisense
TTCTCTCCTGGCTGGGAGTTCATCC 480 685 278 Antisense
GGAGTTCATCCTTTCATACAGCTAT 12 519 292 Antisense
GCTATACGGGATGATGCTCTCTGTC 587 303 312 Antisense
TGCGAATTCCAACACCATTCCAGAT 404 583 531 Antisense
GTATCATCTCCAAGAAACCCCTATT 163 453 580 Antisense
AACTCTTTTCTAATTGGTGCGGCTA 310 141 607 Antisense
TACTTTGCATTATTATTCCTTCGAT 184 645 653 Antisense
TGTTATGCTGTCCTGCATCGAACCA 342 561 679 Antisense
Sequence Source Affymetrix Proprietary Database